New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4572333	75 (1.250)	7 (0.120)	6/228	NT	8.7%	coding (2153/2775 nt)	treY	maltooligosyl trehalose synthase
	?	NC_002947	= 4572365	75 (1.320)					coding (2185/2775 nt)	treY	maltooligosyl trehalose synthase

TGCGTCAATACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4572183‑4572333 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGTTCTCGCTGTCCAGCAGCAGGCCGTCGAGGTAATGAGCGCAGGCGCCTTCGTAGGCCTCGTTCGGCGCGCTCCAGCTACTGCGCAGCTTGGCCTCGCGCAGGGCCTTCT  <  NC_002947/4572365‑4572219                                                                                                                                                                                                                                                                                                            TGCGTCAATACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGC                                                                                                                                                      <  1:843477/150‑1                AGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAG                                                                                                                                                       <  1:1308048/134‑1                AGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAG                                                                                                                                                       >  2:1308048/1‑134                           CAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAGCTGCGCCGCGTCGGCCAGCGACTT                                                                                                                            >  1:1550802/1‑150                                   GCATAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCA                                                                                                                                                        >  1:315431/1‑114                                   GCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCATGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCA                                                                                                                                                        <  2:315431/114‑1                                       AAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTG                                                                                                                <  1:202494/150‑1                                       AAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTG                                                                                                                <  2:1550802/150‑1                                            CCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAAC                                                                                                                                                          <  1:761902/103‑1                                            CCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAAC                                                                                                                                                          >  2:761902/1‑103                                                                                GCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAGCTGCGCCGCGTCGGCCAGCGACTTGC                                                                                                                          <  1:273960/99‑1                                                                                GCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAGCTGCGCCGCGTCGGCCAGCGACTTGC                                                                                                                          >  2:273960/1‑99                                                                                            CTACAAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAGCCAGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCT                                                                                                                 <  1:968417/96‑1                                                                                            CTACAAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAGCCAGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCT                                                                                                                 >  2:968417/1‑96                                                                                                                                                   CAGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGTTCTCGCTGTCCAGCAGCAGGCCGTCGAGGTAATGAGCGCAG                                                                     <  1:554130/85‑1                                                                                                                                                   CAGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGTTCTCGCTGTCCAGCAGCAGGCCGTCGAGGTAATGAGCGCAG                                                                     >  2:554130/1‑85                                                                                                                                                     GCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGTTCTCGCTGTCCAGCAGCAGGCCGTCGAGGTAATGAGCGCAGGCGCCTTCGTAGGCCTCGTTCGGCGCGCTCCAGCTACTGCGCAGCTTGGCCTCGCGCAGGGCCTTCT  <  1:1303942/150‑1                                                                                                                                                      CAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGTTCTCGCTGTCCAGCAGCAGGCCGTCGAGGTAATGAGCGCAGGCGCCTTCGTAGGCCTCGTTCGGCGCGCTCCAGCTACTGCGCAGCTTGGCCTC                >  1:1311664/1‑135                                                                                                                                                      CAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGTTCTCGCTGTCCAGCAGCAGGCCGTCGAGGTAATGAGCGCAGGCGCCTTCGTAGGCCTCGTTCGGCGCGCTCCAGCTACTGCGCAGCTTGGCCTC                <  2:1311664/135‑1                                                                                                                                                                                                                                                                                                            TGCGTCAATACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4572183‑4572333 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGTTCTCGCTGTCCAGCAGCAGGCCGTCGAGGTAATGAGCGCAGGCGCCTTCGTAGGCCTCGTTCGGCGCGCTCCAGCTACTGCGCAGCTTGGCCTCGCGCAGGGCCTTCT  <  NC_002947/4572365‑4572219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.