New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4721670 =	47 (0.790)	3 (0.050)	9/222	NT	7.0%	intergenic (‑29/+35)	PP_4178/htpG	dienelactone hydrolase family protein/chaperone protein HtpG
	?	NC_002947	4721692 =	36 (0.650)					intergenic (‑51/+13)	PP_4178/htpG	dienelactone hydrolase family protein/chaperone protein HtpG

GCCGAGCTGTCGCACATCCTGTTCGATCAGGCGGCCCTGGCGGCCGGTGACAGCCTGAAGGACCCGGCGGCTTACGTTCGTCGCCTGAACAAGCTACTGGTCGAGCTGTCTGCTTGAGTTGATGCACAGCAAAGCCCGCTTCGGCGGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4721821‑4721670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggctttGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGATCGAACA  >  NC_002947/4721692‑4721802                                                                                                                                                                                                                                                                         GCCGAGCTGTCGCACATCCTGTTCGATCAGGCGGCCCTGGCGGCCGGTGACAGCCTGAAGGACCCGGCGGCTTACGTTCGTCGCCTGAACAAGCTACTGGTCGAGCTGTCTGCTTGAGTTGATGCACAGCAAAGCCCGCTTCGGCGGGCT                                                                                                                   >  2:287500/1‑150        TGTCGCACATCCTGTTCGATCAGGCGGCCCTGGCGGCCGGTGACAGCCTGAAGGACCCGGCGGCTTACGTTCGTCGCCTGAACAAGCTACTGGTCGAGCTGTCTGCTTGAGTTGATGCACAGCAAAGCCCGCCGAAGCGGGCTTTGCTGT                                                                                                            <  1:826095/150‑1                    TGTTCGATCAGGCGGCCCTGGCGGCCGGTGACAGCCTGAAGGACCCGGCGGCTTACGTTCGTCGCCTGAACAAGCTACTGGTCGAGCTGTCTGCTTGAGTTGATGCACAGAAAAGCCCGCCGAAGCGGGCTTTG                                                                                                                <  2:1229815/134‑1                               GCGGCCCTGGCGGCCGGTGACAGCCTGAAGGACCCGGCGGCTTACGTTCGTCGCCTGAACAAGCTACTGGTCGAGCTGTCTGCTTGAGTTGATGCACAGCAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAA                                                                                                <  1:916317/139‑1                               GCGGCCCTGGCGGCCGGTGACAGCCTGAAGGACCCGGCGGCTTACGTTCGTCGCCTGAACAAGCTACTGGTCGAGCTGTCTGCTTGAGTTGATGCACAGCAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAA                                                                                                >  2:916317/1‑139                                              GGTGACAGCCTGAAGGACCCGGCGGCTTACGTTCGTCGCCTGAACAAGCTACTGGTCGAGCTGTCTGCTTGAGTTGATGCACAGAAAAGCCCGCCGAAGCGGGCTTTGCTG                                                                                                             <  1:1449951/111‑1                                              GGTGACAGCCTGAAGGACCCGGCGGCTTACGTTCGTCGCCTGAACAAGCTACTGGTCGAGCTGTCTGCTTGAGTTGATGCACAGAAAAGCCCGCCGAAGCGGGCTTTGCTG                                                                                                             >  2:1449951/1‑111                                                                CCGGCGGCTTACGTTCGTCGCCTGAACAAGCTACTGGTCGAGCTGTCTGCTTGAGTTGATGCACAGCAAAGCCCGCTTCGGCGGGC                                                                                                                    >  1:399306/1‑86                                                                CCGGCGGCTTACGTTCGTCGCCTGAACAAGCTACTGGTCGAGCTGTCTGCTTGAGTTGATGCACAGCAAAGCCCGCTTCGGCGGGC                                                                                                                    <  2:399306/86‑1                                                                                          CAAGCTACTGGTCGAGCTGTCTGCTTGAGTTGATGCACAGCAAAGCCCGCCGAAGCGGGCTTTGCT                                                                                                              <  1:557725/66‑1                                                                                          CAAGCTACTGGTCGAGCTGTCTGCTTGAGTTGATGCACAGCAAAGCCCGCCGAAGCGGGCTTTGCT                                                                                                              >  2:557725/1‑66                                                                                                                                  CAAAGCCCGCTTCGGCGGGCTTTTCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGATCGAACA  <  1:1229815/134‑1                                                                                                                                                                                                                                                                         GCCGAGCTGTCGCACATCCTGTTCGATCAGGCGGCCCTGGCGGCCGGTGACAGCCTGAAGGACCCGGCGGCTTACGTTCGTCGCCTGAACAAGCTACTGGTCGAGCTGTCTGCTTGAGTTGATGCACAGCAAAGCCCGCTTCGGCGGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4721821‑4721670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggctttGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGATCGAACA  >  NC_002947/4721692‑4721802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.