New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4721670 =	47 (0.790)	3 (0.050)	9/222	NT	7.0%	intergenic (‑29/+35)	PP_4178/htpG	dienelactone hydrolase family protein/chaperone protein HtpG
	?	NC_002947	4721692 =	36 (0.650)					intergenic (‑51/+13)	PP_4178/htpG	dienelactone hydrolase family protein/chaperone protein HtpG

TCCAGTTCGGCGCCATCACCAGCCCTGGGCGGCCCAGCGCACCCGGCTCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGATCGAACAGGATGTGCGACAGCT  >  NC_002947/4721521‑4721817                                                                                                                                                      |                                                                                                                                                    tCCAGTTCGGCGCCATCACCAGCCCTGGGCGGCCCAGCGCACCCGGCTCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATaaaa                                                                                                                                                     >  2:1320916/1‑150 (MQ=255)   cAGTTCGGCGCCATCACCAGCCCTGGGCGGCCCAGCGCCCCCGGCTCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATaaaaaa                                                                                                                                                   <  1:267671/150‑1 (MQ=255)             ccATCACCAGCCCTGGGCGGCCCAGCGCACCCGGCTCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGaa                                                                                                                                         <  1:1441998/150‑1 (MQ=255)                    gtgcgcTGGGCCGCCCAGGGCACCCGGCTCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCt                                                                                                                                  >  1:316803/6‑150 (MQ=255)                     aGCCCTGGGCGGCCCAGCGCACCCGGCTCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCtt                                                                                                                                 >  1:1412153/1‑150 (MQ=255)                        ccTGGGCGGCCCAGCGCACCCGGCTCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGc                                                                                                                              >  1:1318169/1‑150 (MQ=255)                         cTGGGCGGCCCAGCGCACCCGGCTCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCt                                                                                                                             <  2:1318169/150‑1 (MQ=255)                          ggggCGGCTCAGCGCCCCTGGCTCATAGACCAAACCGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGCCGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAACGCCCGCCGAAGCGGGCTTTGCtg                                                                                                                            <  1:435205/149‑1 (MQ=255)                           gggCGGCCCAGCGCACCCGGCTCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCtgt                                                                                                                           <  2:1521990/150‑1 (MQ=255)                           gggCGGCCCAGCGCACCCGGCTCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCtgt                                                                                                                           <  2:1451633/150‑1 (MQ=255)                                       tgttcgatcaggcggccctggcggccggtgacagcctgaaggacccggcggcttacgttcgtcgcctgaacaagctactggtcgagctgtctgcttgagttgatgcacagaAAAGCCCGCCGAAGCGGGCTTTg                                                                                                                               <  1:1229815‑M1/23‑1 (MQ=255)                                         aCCCGGCTCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGc                                                                                                             >  2:40577/1‑150 (MQ=255)                                          cccGGCTCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCa                                                                                                            <  1:1320916/150‑1 (MQ=255)                                              gCTCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACa                                                                                                        <  2:1388892/150‑1 (MQ=255)                                                tCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGc                                                                                                      >  2:607749/1‑150 (MQ=255)                                                 cATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCt                                                                                                     <  1:373946/150‑1 (MQ=255)                                                  aTAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTg                                                                                                                               <  2:261203/123‑1 (MQ=255)                                                  aTAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTg                                                                                                                               >  1:261203/1‑123 (MQ=255)                                                          aaCGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCaa                                                                                                               <  2:737441/131‑1 (MQ=255)                                                          aaCGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCaa                                                                                                               >  1:737441/1‑131 (MQ=255)                                                                tttCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGt                                                                                      >  2:568339/1‑150 (MQ=255)                                                                        gTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGcga                                                                              >  1:961486/1‑150 (MQ=255)                                                                         tCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGcgac                                                                             >  2:1523293/1‑150 (MQ=255)                                                                             gCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAAc                                                                         <  1:1054153/150‑1 (MQ=255)                                                                             gCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAAc                                                                         <  1:607749/150‑1 (MQ=255)                                                                               cAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCCAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAACTCGACCAGTAGCTTGTTCAGGCGACGAACGt                                                                       >  1:1336222/1‑150 (MQ=255)                                                                                aGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTa                                                                      <  1:40577/150‑1 (MQ=255)                                                                                 gACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTaa                                                                     <  2:316803/150‑1 (MQ=255)                                                                                    aGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCgg                                                                                                                                     <  1:738557/83‑1 (MQ=255)                                                                                    aGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCgg                                                                                                                                     >  2:738557/1‑83 (MQ=255)                                                                                        gATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGc                                                                                                             <  1:319322/103‑1 (MQ=255)                                                                                        gATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGc                                                                                                             >  2:319322/1‑103 (MQ=255)                                                                                            aaCCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTc                                                          >  1:287500/1‑150 (MQ=255)                                                                                                 gCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGCCACAATGAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACACCGCGATCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCa                                                     <  1:298480/150‑1 (MQ=255)                                                                                                         acgaTTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTcc                                                         >  2:110758/1‑138 (MQ=255)                                                                                                         acgaTTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTcc                                                         <  1:110758/138‑1 (MQ=255)                                                                                                         acgaTTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACGCAACCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTACGCCGCCGCGGCCCTCAGGCtctcc                                             >  2:95509/1‑149 (MQ=255)                                                                                                                 tttGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGgccgc                                     >  1:1574136/1‑150 (MQ=255)                                                                                                                     cTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTCCTGTGCATCAACTAAAGCAGCCAGCTCGACCAGTAGCTTGTTCACGCGCCGATCGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAgg                                 <  2:1421066/150‑1 (MQ=255)                                                                                                                         tcaAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACg                                                                        <  1:1098811/107‑1 (MQ=255)                                                                                                                         tcaAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACg                                                                        >  2:1098811/1‑107 (MQ=255)                                                                                                                                cTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGgcc                                       <  2:50473/133‑1 (MQ=255)                                                                                                                                cTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGgcc                                       >  1:50473/1‑133 (MQ=255)                                                                                                                                 tCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGATCg                     >  2:968042/1‑150 (MQ=255)                                                                                                                                     ttgagttgatgcacagcAAAGCCCGCTTCGGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGgccgc                            <  1:916317‑M1/122‑1 (MQ=255)                                                                                                                                     ttgagttgatgcacagcAAAGCCCGCTTCGGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGgccgc                            >  2:916317‑M1/18‑139 (MQ=255)                                                                                                                                          aCTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGa                        <  2:123366/138‑1 (MQ=255)                                                                                                                                          aCTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGa                        >  1:123366/1‑138 (MQ=255)                                                                                                                                          aCTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGATCGAACAGGAtg            <  2:961486/150‑1 (MQ=255)                                                                                                                                               tCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGATCGAACAGGAt             >  2:426594/1‑144 (MQ=255)                                                                                                                                               tCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGATCGAACAGGAt             <  1:426594/144‑1 (MQ=255)                                                                                                                                               tCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGATCGAACAGGATGTGCGa       >  2:418010/1‑150 (MQ=255)                                                                                                                                                 acagcAAAGCCCGCTTCGGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGATCGAACAGGATGTGCGACa     <  1:826095‑M1/145‑1 (MQ=255)                                                                                                                                                  cagcAAAGCCCGCTTCGGCGGGCTTTTCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCAcc                                           >  2:1449951‑M1/5‑111 (MQ=255)                                                                                                                                                  cagcAAAGCCCGCTTCGGCGGGCTTTTCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCAcc                                           <  1:1449951‑M1/107‑1 (MQ=255)                                                                                                                                                   agcAAAGCCCGCTTCGGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTg                                                                                       >  2:557725‑M1/4‑66 (MQ=255)                                                                                                                                                   agcAAAGCCCGCTTCGGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTg                                                                                       <  1:557725‑M1/63‑1 (MQ=255)                                                                                                                                                    aaaaaGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGATCGAACAGGATGTGCGACAGCt  <  1:568339/150‑1 (MQ=255)                                                                                                                                                     cAAAGCCCGCTTCGGCGGGCTTTTCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGATCGAACa                 <  2:1229815‑M1/133‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    TCCAGTTCGGCGCCATCACCAGCCCTGGGCGGCCCAGCGCACCCGGCTCATAGACCAAACGGCTTTCGTAGGTCTTGCCAGACAGGTGATAAACCAGCGATTCGACGATTACTTTGCTCATCAAGCACTCCTTTGGCACTCGTCATAAAAAAGCCCGCCGAAGCGGGCTTTGCTGTGCATCAACTCAAGCAGACAGCTCGACCAGTAGCTTGTTCAGGCGACGAACGTAAGCCGCCGGGTCCTTCAGGCTGTCACCGGCCGCCAGGGCCGCCTGATCGAACAGGATGTGCGACAGCT  >  NC_002947/4721521‑4721817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.