| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5159794 = | 86 (1.440) | 6 (0.140) | 5/178 | NT | 9.7% | intergenic (+9/+97) | PP_4542/PP_4543 | ABC transporter ATP‑binding protein/permease/hypothetical protein |
| ? | NC_002947 | 5159871 = | 48 (1.080) | intergenic (+86/+20) | PP_4542/PP_4543 | ABC transporter ATP‑binding protein/permease/hypothetical protein | |||||
GATTTTCTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5159971‑5159794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCC > NC_002947/5159871‑5160012 GATTTTCTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGT > 1:1589159/1‑150 TTTTCTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAAAGATAGCGAACCTGTGTAG > 1:1358659/1‑150 CTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGG < 2:680595/150‑1 CTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTAATGAAGCGATAGCGAACCTGTGTAGGAGCGGG < 1:43161/150‑1 TGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGT > 2:930803/1‑150 GCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGct > 2:927884/1‑148 GAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAA > 1:1090597/1‑150 cCAAGGGGTAGGCCGAAGGGCCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGCTCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAACCCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCG < 2:1589159/149‑1 TCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCG > 2:1269790/1‑150 GGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAA > 1:1627640/1‑59 GGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAA < 2:1627640/59‑1 CCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACA < 1:1451548/101‑1 CCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACA > 2:1451548/1‑101 CCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCC‑GCGCAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCGCCCGCGCCGCTGCGGCATACCCCTTGACCCCTTCCCGTTCCTTCAGC > 2:644040/1‑150 CCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTC < 2:1040159/77‑1 CCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTC > 1:1040159/1‑77 CCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTAC > 2:693975/1‑43 CCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTAC < 1:693975/43‑1 CTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAA > 1:568754/1‑150 GTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAAC > 1:1043157/1‑150 GTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAAC < 1:182194/150‑1 TAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAA > 2:846500/1‑148 TAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAA < 1:846500/148‑1 GGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCC > 2:673749/1‑150 GAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGC > 2:196950/1‑116 GAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGC < 1:196950/116‑1 GCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGG > 1:1421393/1‑150 atctCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGC < 1:912392/146‑1 TACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCA < 2:1498866/150‑1 ACCCGCGAAAAGGCCGGCACAGGCAACAAAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCCTACCCCTTGACCCCTTCCCGTGCCTTCATGATAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAG < 1:1518918/150‑1 CCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGG < 1:673749/150‑1 CCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGA < 2:1518625/88‑1 CCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCAGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGA > 1:1518625/1‑88 agGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCC > 1:471374/3‑63 CCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGT > 2:416887/1‑150 CCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCGGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGT > 2:1099185/1‑150 CCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCC < 2:471374/63‑1 GCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAA > 1:241403/1‑150 AAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCC > 1:1086185/1‑85 AAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCC < 2:1086185/85‑1 AAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCC < 1:996185/150‑1 GATTTTCTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5159971‑5159794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCC > NC_002947/5159871‑5160012 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |