New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5460679 =	112 (1.870)	4 (0.080)	4/194	NT	5.2%	intergenic (+12/‑205)	holA/PP_4797	DNA polymerase III subunit delta/hypothetical protein
	?	NC_002947	5460783 =	56 (1.160)					intergenic (+116/‑101)	holA/PP_4797	DNA polymerase III subunit delta/hypothetical protein

TAGGCCCCCCGAAGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5460845‑5460679 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCCCAACAAGGCCAAGTCCATC  >  NC_002947/5460783‑5460931                                                                                                                                                                                                                                                                                                                              TAGGCCCCCCGAAGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCG                                                                                                                                                                        <  1:196460/150‑1  AGGCCCCCCGAAGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGTAGATTGATTAGCAGGTCCGGCCTCTTCGCGG                                                                                                                                                                       <  2:1011049/150‑1  AGGCCCCCCGAAGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGG                                                                                                                                                                       >  2:654125/1‑150  AGGCCCCCCGAAGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGG                                                                                                                                                                       <  2:466255/150‑1    GCCCCCCGAAGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGT                                                                                                                                                                     >  2:893920/1‑150      CCCCCGAAGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAA                                                                                                                                                                   >  1:1151591/1‑150      CCCCCGAAGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAA                                                                                                                                                                   >  1:367868/1‑150       CCCCGAAGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAA                                                                                                                                                                  >  2:976135/1‑150       CCCCGAAGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAA                                                                                                                                                                  >  1:594682/1‑150        CCCGAAGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCTGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAAC                                                                                                                                                                 <  2:569010/150‑1          CGAAGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCC                                                                                                                                                               <  2:367868/150‑1          CGAAGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCC                                                                                                                                                               >  1:1312773/1‑150             AGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCCGCT                                                                                                                                                            <  1:749951/150‑1              GGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAAC                                                                                                                                                                 >  2:271572/1‑144              GGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAAC                                                                                                                                                                 <  1:271572/144‑1                     GGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCCGCTACTACtac                                                                                                                                                    <  2:1228296/150‑4                         AATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGG                                                                                                                                                                       <  1:1507103/127‑1                         AATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGG                                                                                                                                                                       >  2:1507103/1‑127                                                  GCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAA                                                                                                                                                                  >  1:1436322/1‑107                                                  GCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAA                                                                                                                                                                  <  2:1436322/107‑1                                                      GTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCA                                                                                                                   >  1:1196934/1‑150                                                                        GGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCC                                                                                                                                                               >  1:1387653/1‑88                                                                        GGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCC                                                                                                                                                               <  2:1387653/88‑1                                                                         GGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                             <  1:650094/89‑1                                                                         GGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                             >  2:650094/1‑89                                                                               CCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGG                                                                                             >  1:956691/1‑147                                                                               CCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGG                                                                                             <  2:956691/147‑1                                                                                                                                       GTCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGA                                  <  2:1196934/150‑1                                                                                                                                                 TTCGCGGGTAAACCCGCTCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGG                        <  2:749951/150‑1                                                                                                                                                    GCGGGTAAACCCGCTCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCC                     <  2:1357724/150‑1                                                                                                                                                        GTAAACCCGCTCCTACACATAGGCACCAGCGCCTCGACCATATACAAAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCCCAAC                 >  1:1116815/1‑150                                                                                                                                                          AAACCCGCTCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCG                                                             >  2:1248669/1‑104                                                                                                                                                          AAACCCGCTCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCG                                                             <  1:1248669/104‑1                                                                                                                                                           AACCCGCTCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCCCAACAAG              <  1:1063482/150‑1                                                                                                                                                             CCCGCTCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCCCAACAAGGC            >  1:325017/1‑150                                                                                                                                                             CCCGCTCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCACCAACAAGGC            <  2:325017/150‑1                                                                                                                                                             CCCGCTCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCAAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCCCAACAAGGC            >  2:50021/1‑150                                                                                                                                                              CCGCTCCTACACATAGGCACCAGCGCCTCGACCATCTCCACCATCACGCGGTCCCCACCCGTCGGGGGGCCAAAACGGCTCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCCCAACAAGGCC           <  1:773559/150‑1                                                                                                                                                              CCGCTCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCTCACAGTTCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCCCAACAAGGCC           <  1:1017732/150‑1                                                                                                                                                               CGCTCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCCCAACAAGGCCA          >  2:1280992/1‑150                                                                                                                                                                  TCCTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCCCAACAAGGCCAAGT       <  1:1280992/150‑1                                                                                                                                                                    CTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCCCAACAAGGCCAAGTCC     >  2:1397442/1‑150                                                                                                                                                                    CTACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCCCAACAAGGCCAAGTCC     <  1:1397442/150‑1                                                                                                                                                                      ACACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCCCAACAAGGCCAAGTCCAT   >  2:366722/1‑150                                                                                                                                                                       CACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCCCAACAAGGCCAAGTCCATC  <  1:1294777/150‑1                                                                                                                                                                                                                                                                                                                              TAGGCCCCCCGAAGGGTGGGGGCCAATTGATTGTGTATATGGTCGAGGCGCTGGTGCCTATGTGTAGGAGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5460845‑5460679 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacACATAGGCACCAGCGCCTCGACCATATACACAATCAATTGGCCCCCACCCTTCGGGGGGCCTACAGTGCGCCCGAAACTCACCCAACCCGGGAAGCCCACCATGAGCAAAAAGCCGAAAAAGCACGGCCCCAACAAGGCCAAGTCCATC  >  NC_002947/5460783‑5460931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.