| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5653264 = | 68 (1.140) | 4 (0.070) | 4/228 | NT | 5.9% | coding (99/252 nt) | PP_4962 | hypothetical protein |
| ? | NC_002947 | 5653301 = | 64 (1.130) | coding (62/252 nt) | PP_4962 | hypothetical protein | |||||
GGCGCTTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5653354‑5653264‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCACCGGTAG > NC_002947/5653301‑5653447 GGCGCTTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGC < 1:843498/90‑1GGCGCGTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGC > 2:843498/1‑90 CGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGC > 1:519406/1‑107 CGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGC < 2:519406/107‑1 CTGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGC > 1:779444/1‑73 CTGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGC < 2:779444/73‑1 CGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCACCGGT > 2:320777/1‑150 GGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCACCGGTA < 2:1113931/150‑1 GCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACACCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCAgatcgga > 1:766853/1‑143 GGCGCTTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5653354‑5653264‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCACCGGTAG > NC_002947/5653301‑5653447 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |