| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5816900 = | 51 (0.850) | 14 (0.250) | 10/222 | NT | 24.7% | intergenic (+30/+99) | PP_5092/pilT | NLP/P60 protein/twitching motility protein |
| ? | NC_002947 | 5816983 = | 38 (0.690) | intergenic (+113/+16) | PP_5092/pilT | NLP/P60 protein/twitching motility protein | |||||
ACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5817055‑5816900‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTAC > NC_002947/5816983‑5817129 ACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCC < 1:917874/150‑1 CTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCACCCTCCATCGTCAGCATCCCC > 1:84254/1‑150 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCC > 1:256153/1‑150 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCC > 1:634275/1‑150 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTC < 1:288097/111‑1 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTC > 2:288097/1‑111 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGG > 2:671097/1‑67 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGG < 1:671097/67‑1 CACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCACCG > 1:561681/1‑150 CACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAA < 2:718672/85‑1 CACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAA > 1:718672/1‑85 GTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCC > 2:1254116/1‑150 GTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCC > 2:92708/1‑98 GTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCC < 1:92708/98‑1 AGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCT < 2:634275/150‑1 AGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAA < 2:84254/150‑1 AGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAA < 2:256153/150‑1 GCCCGCGAAAGGGCCTTTGCAGGTACTACCAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCA < 1:617312/150‑1 CCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCGCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAG > 1:1439342/1‑150 CCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAG < 1:1254116/150‑1 CCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGG < 2:1401499/150‑1 GAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTAC > 1:1047453/1‑150 GAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGC > 1:350118/1‑104 GAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGC < 2:350118/104‑1 ACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5817055‑5816900‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTAC > NC_002947/5816983‑5817129 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |