New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5828405 =	57 (0.950)	5 (0.090)	5/230	NT	8.7%	coding (503/855 nt)	rpoH	RNA polymerase factor sigma‑32
	?	NC_002947	5828441 =	50 (0.870)					coding (467/855 nt)	rpoH	RNA polymerase factor sigma‑32

AACGACGAAGTGCATCGCGTGGCGGAAAGCCTTGGCGTCGAGCCGCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5828454‑5828405 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgaTGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAGCCACCTTGACGATGCGCCAGTTGCGCAGAATGAACTCGTGGATCTCTGCCTTGATCCAGTGCA  >  NC_002947/5828441‑5828588                                                                                                                                                                                                        AACGACGAAGTGCATCGCGTGGCGGAAAGCCTTGGCGTCGAGCCGCGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAGCCACCTTGACGATGC                                                  >  2:1057594/1‑150         AGTGCATCGCGTGGCGGAAAGCCTTGGCGTCGAGCCGCGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGG                                                                       >  1:180759/1‑121         AGTGCATCGCGTGGCGGAAAGCCTTGGCGTCGAGCCGCGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGG                                                                       <  2:180759/121‑1               TCGCGTGGCGGAAAGCCTTGGCGTCGAGCCGCGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAG                                                                 >  1:1514124/1‑121               TCGCGTGGCGGAAAGCCTTGGCGTCGAGCCGCGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAG                                                                 <  2:1514124/121‑1                                          GCCGCGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAGCCACCTTGACGATGCGCCAGTTGCGCAGAATGAACTCGTGGATCTCTGCCTTGATC         <  1:1057594/150‑1                                               GCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAGCCACCTTGACGATGCGCCAGTTGCGCAGAATGAACTCGTGGATCTCTGCCTTGATCCAGTG    >  1:1543767/1‑150                                                 GATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAGCCACCTTGACGATGCGCCAGTTGCGCAGAATGAACTCGTGGATCTCTGCCTTGATCCAGTGCA  >  1:1463406/1‑150                                                 GATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAGCCACCTTGACGATGCGCCAGTTGCGCAGAATGAACTCGTGGATCTCTGCCTTGATCCAGTGCA  >  2:1373801/1‑150                                                                                                                                                                                                        AACGACGAAGTGCATCGCGTGGCGGAAAGCCTTGGCGTCGAGCCGCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5828454‑5828405 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgaTGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAGCCACCTTGACGATGCGCCAGTTGCGCAGAATGAACTCGTGGATCTCTGCCTTGATCCAGTGCA  >  NC_002947/5828441‑5828588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.