New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5828405 =	57 (0.950)	5 (0.090)	5/230	NT	8.7%	coding (503/855 nt)	rpoH	RNA polymerase factor sigma‑32
	?	NC_002947	5828441 =	50 (0.870)					coding (467/855 nt)	rpoH	RNA polymerase factor sigma‑32

GTCGGCATCCTCAAGCTGCACCGCCGGATCGTAACGGTGGTCTTCCAGGTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAGCCACCTTGACGATGCGC  >  NC_002947/5828257‑5828542                                                                                                                                                     |                                                                                                                                          tgcactggatcaaggcagagatccacgagttcattctgcgcaactggcgcatcgtcaaggtggctaccaccaaggctcagcgcaagctgttcttcaacctgcgtagccagaagaagcgcctggcgtggctgaacaacgacgaagtgcaTc                                                                                                                                          >  2:1373801‑M1/149‑150 (MQ=255) tgcactggatcaaggcagagatccacgagttcattctgcgcaactggcgcatcgtcaaggtggctaccaccaaggctcagcgcaagctgttcttcaacctgcgtagccagaagaagcgcctggcgtggctgaacaacgacgaagtgcaTc                                                                                                                                          >  1:1463406‑M1/149‑150 (MQ=255)   cactggatcaaggcagagatccacgagttcattctgcgcaactggcgcatcgtcaaggtggctaccaccaaggctcagcgcaagctgttcttcaacctgcgtagccagaagaagcgcctggcgtggctgaacaacgacgaagtgcaTcgc                                                                                                                                        >  1:1543767‑M1/147‑150 (MQ=255)       aTCCTCAAGCTGCACCGCCGGATCGTAACGGTGGTCTTCCAGGTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCgg                                                                                                                                    >  1:1453682/1‑150 (MQ=255)        gatcaaggcagagatccacgagttcattctgcgcaactggcgcatcgtcaaggtggctaccaccaaggctcagcgcaagctgttcttcaacctgcgtagccagaagaagcgcctggcgtggctgaacaacgacgaagtgcaTCGCGCGGc                                                                                                                                   <  1:1057594‑M1/9‑1 (MQ=255)          cTCAAGCTGCACCGCCGGATCGTAACGGTGGTCTTCCAGGTAATGCGCAGGCGACTGGAAGGCACTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTc                                                                                                                                 >  1:1482674/1‑150 (MQ=255)            cAAGCTGCACCGCCGGATCGTAACGGTGGTCTTCCAGGTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGa                                                                                                                               >  2:1376295/1‑150 (MQ=255)             aaGCTGCACCGCCGGATCGTAACGGCGGTCTTCCAGGTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGAc                                                                                                                              <  2:446270/150‑1 (MQ=255)                       ggcgGAGCGTGACGGTGGTCTTGGGGGTAATGCGCAGGCGACTGGAAGGCACTGTCGTCGGCAGCTTCCGCTGGGGGGTCAAAGGCCATGGCGTGGGCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCtt                                                                                                                    <  2:1482674/148‑1 (MQ=255)                        ccgGATCGTAACGGTGGTCTTCCAGGTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCttt                                                                                                                   >  1:595410/1‑150 (MQ=255)                          ggATCGTAACGGTGGTCTTCCAGGTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTcc                                                                                                                 <  2:1453682/150‑1 (MQ=255)                          ggATCGTAACGGTGGTCTTCCAGGTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTcc                                                                                                                 <  2:1239546/150‑1 (MQ=255)                                       ggtCTTCCAGGTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTc                                                                                                                                 <  1:1283218/121‑1 (MQ=255)                                       ggtCTTCCAGGTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTc                                                                                                                                 >  2:1283218/1‑121 (MQ=255)                                         tCTTCCAGGTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCTTCCGCTTCCGCTGCCGGGTCAAAGACCCTCTACACGCCGCTGAGGCGACTCGCCGTCCCGCTCATTTGGCACGGCTCGACCTCAATTCTTTCCGCCACGCGATGCCCt                                                                                                  <  2:598065/150‑1 (MQ=255)                                           ttCCAGGTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTtc                                                                                                >  2:1479679/1‑150 (MQ=255)                                           ttCCAGGTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTtc                                                                                                <  2:603393/150‑1 (MQ=255)                                           ttCCAGGTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTtc                                                                                                >  2:55747/1‑150 (MQ=255)                                                 gcatcgtcaaggtggctaccaccaaggctcagcgcaagctgttcttcaacctgcgtagccagaagaagcgcctggcgtggctgaacaacgacgaagtgcaTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCgtt                                                                                          >  2:1057594‑M1/101‑150 (MQ=255)                                                 gTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCgtt                                                                                          <  2:1440653/150‑1 (MQ=255)                                                 gTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCgtt                                                                                          >  2:1297286/1‑150 (MQ=255)                                                  tAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCgttg                                                                                         <  1:1376295/150‑1 (MQ=255)                                                   aaTGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCgttgt                                                                                        <  2:372350/150‑1 (MQ=255)                                                      gcgcAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCa                                                                                     <  2:915198/150‑1 (MQ=255)                                                       cgcAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAg                                                                                    <  1:55747/150‑1 (MQ=255)                                                              gACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGcc                                                                             >  2:1012751/1‑150 (MQ=255)                                                                ctaccaccaaggctcagcgcaagctgttcttcaacctgcgtagccagaagaagcgcctggcgtggctgaacaacgacgaagtgcaTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGa                                                                                                        <  2:1514124‑M1/36‑1 (MQ=255)                                                                ctaccaccaaggctcagcgcaagctgttcttcaacctgcgtagccagaagaagcgcctggcgtggctgaacaacgacgaagtgcaTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGa                                                                                                        >  1:1514124‑M1/86‑121 (MQ=255)                                                                      ccaaggctcagcgcaagctgttcttcaacctgcgtagccagaagaagcgcctggcgtggctgaacaacgacgaagtgcaTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACt                                                                                                  <  2:180759‑M1/42‑1 (MQ=255)                                                                      ccaaggctcagcgcaagctgttcttcaacctgcgtagccagaagaagcgcctggcgtggctgaacaacgacgaagtgcaTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACt                                                                                                  >  1:180759‑M1/80‑121 (MQ=255)                                                                         gcTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCGATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTc                                                                                                                                 >  1:203307/1‑87 (MQ=255)                                                                         gcTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTc                                                                                                                                 <  2:203307/87‑1 (MQ=255)                                                                         gcTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGcttctt                                                                  >  1:954148/1‑150 (MQ=255)                                                                          cTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGc                                                                                                                      <  1:565131/97‑1 (MQ=255)                                                                          cTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGc                                                                                                                      >  2:565131/1‑97 (MQ=255)                                                                          cTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTACGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCttcttc                                                                 >  1:1440968/1‑150 (MQ=255)                                                                             tcgtcgtcAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTgg                                                              <  2:1620285/150‑1 (MQ=255)                                                                              cgtcgtcAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGc                                                             <  1:1479679/150‑1 (MQ=255)                                                                               gtcgtcAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTGGTTCTTGATCCACGCCAGGCGCTTCTTCTGGCt                                                            >  1:415115/1‑150 (MQ=255)                                                                               gtagtcAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCt                                                            >  1:1642012/4‑150 (MQ=255)                                                                                   tcAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGc                                                        >  2:687886/1‑150 (MQ=255)                                                                                    catcTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCa                                                       <  1:137166/147‑1 (MQ=255)                                                                                      gCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAgg                                                     <  1:687886/150‑1 (MQ=255)                                                                                       cTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGt                                                    >  2:607211/1‑150 (MQ=255)                                                                                          ccGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCTATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTga                                                 <  2:595410/150‑1 (MQ=255)                                                                                                       aaaGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTg                                                               <  1:305094/123‑1 (MQ=255)                                                                                                       aaaGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTg                                                               >  2:305094/1‑123 (MQ=255)                                                                                                        aaGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCgtt                                                                                          <  2:323355/95‑1 (MQ=255)                                                                                                        aaGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCgtt                                                                                          >  1:323355/1‑95 (MQ=255)                                                                                                         aGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCt                                  >  1:1066494/1‑150 (MQ=255)                                                                                                          ggCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTg                                 >  1:1574979/1‑150 (MQ=255)                                                                                                                  ccTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTgcgc                                   <  2:1298952/140‑1 (MQ=255)                                                                                                                  ccTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTgcgc                                   >  1:1298952/1‑140 (MQ=255)                                                                                                                  ccTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTtgg                         <  1:1281963/150‑1 (MQ=255)                                                                                                                   cTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGACTGGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTtggt                        >  1:837057/1‑150 (MQ=255)                                                                                                                    tGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTtcttct                                                                >  1:1061899/1‑109 (MQ=255)                                                                                                                    tGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTtcttct                                                                <  2:1061899/109‑1 (MQ=255)                                                                                                                         gCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAGc                  <  2:1642012/150‑1 (MQ=255)                                                                                                                           tGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGTCTCGACGCCAAGGCTTTCCGCCACGCGATCCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAGCCa                >  1:451381/1‑150 (MQ=255)                                                                                                                                 ggcTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAGCCACCTTGa          >  2:1269909/1‑150 (MQ=255)                                                                                                                                    tttCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAGCCACCTTGACGa       >  2:107041/1‑150 (MQ=255)                                                                                                                                         aTCTCGCGCACTTCGCGCGGCTCGACGCCAAGGATTAGGTTCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAGCCACCTTGACGATgcgc  <  1:1319206/150‑1 (MQ=255)                                                                                                                                          tctcGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGc                                                                                                               <  1:911059/40‑1 (MQ=255)                                                                                                                                          tctcGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGc                                                                                                               >  2:911059/1‑40 (MQ=255)                                                                                                                                            tcGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTtcttct                                                                >  1:1357623/1‑85 (MQ=255)                                                                                                                                            tcGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTtcttct                                                                <  2:1357623/85‑1 (MQ=255)                                                                                                                                                    ttCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTtg                          <  1:1304805/115‑1 (MQ=255)                                                                                                                                                    ttCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTtg                          >  2:1304805/1‑115 (MQ=255)                                                                                                                                                     |                                                                                                                                          GTCGGCATCCTCAAGCTGCACCGCCGGATCGTAACGGTGGTCTTCCAGGTAATGCGCAGGCGACTGGAAGGCGCTGTCGTCGTCAGCTTCCGCTGCCGGGTCAAAGGCCATGTCCTGGCCGCTGAGGCGGCTTTCCATCTCGCGCACTTCGCGCGGCTCGACGCCAAGGCTTTCCGCCACGCGATGCACTTCGTCGTTGTTCAGCCACGCCAGGCGCTTCTTCTGGCTACGCAGGTTGAAGAACAGCTTGCGCTGAGCCTTGGTGGTAGCCACCTTGACGATGCGC  >  NC_002947/5828257‑5828542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.