New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 598449157 (0.950)9 (0.190) 10/194 NT 16.1% intergenic (+31/+58) PP_5242/ycaC‑II GAF domain‑containing sensor histidine kinase/putative hydrolase
?NC_002947 = 5984511 48 (0.990)intergenic (+51/+38) PP_5242/ycaC‑II GAF domain‑containing sensor histidine kinase/putative hydrolase

ACCACCAAGACCGGTGGCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5984320‑5984491
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtaaacccgcCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCTGAGCCACC  <  NC_002947/5984511‑5984367
                                                                                                                                                                                                                                                                                                                             
ACCACCAAGACCGGTGGCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCG                                                                                                                                                                         >  1:1542136/1‑150
  CACCAAGACCGGTGGCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCCGCTGCAGGCGCTGGTGTCGCAGTTGGGAGGATGGCGGATTCGGGTCAGTCTGCATTTGAATCACGCATAGCCTGTGCCGGt                                                                                                                                                                       >  1:1248801/1‑149
                GCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAA                                                                                                                                                         <  1:461789/150‑1
                  ATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAAC                                                                                                                                                       >  2:477426/1‑150
                      GGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                   <  1:477426/150‑1
                      GGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGGGCCGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                   <  1:353605/150‑1
                                        GTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAG                                                                                                                                 >  1:1472326/1‑150
                                           GTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAG                                                                                                                              >  1:640072/1‑150
                                              CGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGG                                                                                                                           <  2:1472326/150‑1
                                              CGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGG                                                                                                                           <  2:640072/150‑1
                                                            CACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGC                                                                                                                                                                       >  2:220095/1‑92
                                                            CACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGC                                                                                                                                                                       <  1:220095/92‑1
                                                              CGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGG                                                                                                                           >  1:991148/1‑134
                                                                                                         CGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGC                                                                                                                                                               >  1:217660/1‑55
                                                                                                         CGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGC                                                                                                                                                               >  1:216900/1‑55
                                                                                                         CGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGC                                                                                                                                                               <  2:217660/55‑1
                                                                                                         CGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGC                                                                                                                                                               <  2:216900/55‑1
                                                                                                                 TGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCG                                                                                                                            >  2:1638654/1‑82
                                                                                                                 TGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCG                                                                                                                            <  1:1638654/82‑1
                                                                                                                       TCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGG                                                                                                                           >  1:1566565/1‑77
                                                                                                                       TCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGG                                                                                                                           <  2:1566565/77‑1
                                                                                                                                                      GCCTCTTCGCGGGTAAACCCGCTCCTACGGTCGGCTGTAGGGGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCT                         >  1:973158/1‑144
                                                                                                                                                      GCCTCTTCGCGGGTAAACCCGCTCCTACGGTCGGCTGTAGGGGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCT                         <  2:973158/144‑1
                                                                                                                                                      GCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACT                                              <  1:701352/123‑1
                                                                                                                                                      GCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACT                                              >  2:701352/1‑123
                                                                                                                                                      GCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACA                                                                    <  2:1296783/101‑1
                                                                                                                                                      GCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACA                                                                    >  1:1296783/1‑101
                                                                                                                                                      GCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAACGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCACCTGCCCGC                   >  2:1248801/1‑150
                                                                                                                                                      GCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTAGGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGC                   >  1:1343121/1‑150
                                                                                                                                                           TTCGCGGGTAAACCCGCTCCTACGGTCGGCTGTAGGGGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGG              >  2:246827/1‑150
                                                                                                                                                           TTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGC                                            >  1:882407/1‑120
                                                                                                                                                           TTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGAAACGAATCCGGCATCCACCCAACTGC                                            <  2:882407/120‑1
                                                                                                                                                                GGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCTG         >  2:1340123/1‑150
                                                                                                                                                                   TAACCCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCTGAGC      <  2:936662/150‑1
                                                                                                                                                                       CCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCTGAGCCACC  >  2:24699/1‑150
                                                                                                                                                                       CCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAA                                                                >  1:50933/1‑88
                                                                                                                                                                       CCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAA                                                                <  2:50933/88‑1
                                                                                                                                                                        CCGCTCCTACGGTCGGCTGTAGGGGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCG                 >  2:991148/1‑134
                                                                                                                                                                        CCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCTGAGCCAC   >  2:414798/1‑148
                                                                                                                                                                        CCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGC                                                          <  2:1603508/93‑1
                                                                                                                                                                        CCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGC                                                          >  1:1603508/1‑93
                                                                                                                                                                        CCGCCCCTACAGCCGACCGTAGGAGCGCCTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCTGAGCCAC   <  1:414798/148‑1
                                                                                                                                                                                                                                                                                                                             
ACCACCAAGACCGGTGGCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5984320‑5984491
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtaaacccgcCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCTGAGCCACC  <  NC_002947/5984511‑5984367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.