| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6002402 = | 109 (1.820) | 8 (0.150) | 6/208 | NT | 9.4% | intergenic (‑46/+100) | amaA/amaB | L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase |
| ? | NC_002947 | 6002454 = | 60 (1.160) | intergenic (‑98/+48) | amaA/amaB | L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase | |||||
CGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6002553‑6002402‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtaggagcgggtCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGAC > NC_002947/6002454‑6002601 CGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGG < 1:1553391/150‑1CGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGG < 1:1177275/150‑1 TGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGT > 1:74282/1‑150 TGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGT < 2:1240548/150‑1 GCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGG < 1:1614586/138‑1 GCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGG > 2:1614586/1‑138 GCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCC > 2:523738/1‑46 GCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCC < 1:523738/46‑1 CTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTG > 2:520399/1‑150 CTACAGGGTTCATCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACC < 1:1270003/110‑1 CTACAGGGTTCATCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACC > 2:1270003/1‑110 TACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGG > 1:1274686/1‑150 TACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCA > 2:753335/1‑123 TACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCA < 1:753335/123‑1 ACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCA > 2:1589142/1‑93 ACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCA < 1:1589142/93‑1 CCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGA < 1:716141/106‑1 CCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGA > 2:716141/1‑106 CTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCA > 2:1191394/1‑150 CTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCA > 2:509806/1‑112 CTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCA < 1:509806/112‑1 GGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAA < 1:627587/60‑1 GGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAA > 2:627587/1‑60 GTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGAC > 2:1474913/1‑150 GTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGAC < 2:1553391/150‑1 CGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6002553‑6002402‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtaggagcgggtCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGAC > NC_002947/6002454‑6002601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |