New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 530833 =48 (0.800)3 (0.050) 3/234 NT 5.8% coding (744/960 nt) birA bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
?NC_002947 530860 = 51 (0.870)coding (771/960 nt) birA bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA

GTGGTGCTAGGCATTGGTATCAATGTAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATGGCGTGGTTCTTGGCGTCGACGGGCAGGGTGGTTTGCGCCTTGA  >  NC_002947/530684‑530982
                                                                                                                                                     |                                                                                                                                                     
gtggtgCTAGGCATTGGTATCAATGTAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGgcg                                                                                                                                                       >  2:1030629/1‑150 (MQ=255)
 tggtgCTAGGCATTGGTATCAATGTAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGgcgc                                                                                                                                                      <  1:94337/150‑1 (MQ=255)
    tgCTAGGCATTGGTATCAATGTAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTc                                                                                                                                                   <  1:1030629/150‑1 (MQ=255)
      cgaGGCATTGGTATCAATATAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCGGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCAt                                                                                                                                                 <  1:1594733/148‑1 (MQ=255)
        aGGCATTGGTATCAATGTAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATcg                                                                                                                                               >  1:1009855/1‑150 (MQ=255)
            aTTGGTATCAATGTAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGgcgc                                                                                                                                                      >  1:1522541/1‑139 (MQ=255)
            aTTGGTATCAATGTAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGgcgc                                                                                                                                                      <  2:1522541/139‑1 (MQ=255)
               ggTATCAATGTAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTAc                                                                                                                                        <  1:1467613/150‑1 (MQ=255)
                 tATCAATGTAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACgg                                                                                                                                      <  1:1364327/150‑1 (MQ=255)
                 tATCAATGTAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACgg                                                                                                                                      <  2:1009855/150‑1 (MQ=255)
                   tCAATGTAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCt                                                                                                                                    <  1:1190669/150‑1 (MQ=255)
                        gTAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTCTGAGTCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGcc                                                                                                                               >  1:1105282/1‑150 (MQ=255)
                         tAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCg                                                                                                                              >  1:20931/1‑150 (MQ=255)
                                 cAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCag                                                                                                                      <  2:20931/150‑1 (MQ=255)
                                 cAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCag                                                                                                                      <  1:966917/150‑1 (MQ=255)
                                  aGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTAGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCagg                                                                                                                     >  1:1475968/1‑150 (MQ=255)
                                   ggTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATcgc                                                                                                                                              >  2:4317/1‑124 (MQ=255)
                                   ggTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATcgc                                                                                                                                              <  1:4317/124‑1 (MQ=255)
                                    aaccaccctgcccgtcgacgccaagaaccacgccatcaatacgtgtactaccagcaaccagcgatacactgcgcccctgccacaagtgcgcctgctcccactcctcctggaatGCGTCATCGCCGCTACGGCTTTGCCGCATTCCaggag                                                                                                                   >  1:950581‑M1/114‑150 (MQ=255)
                                            acAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGa                                                                                                           <  2:1105282/150‑1 (MQ=255)
                                                        gcagGGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACtt                                                                                               >  2:1229619/1‑150 (MQ=255)
                                                           gTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTtgtg                                                                                            >  2:948610/1‑150 (MQ=255)
                                                                        cggcgTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTAGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAAt                                                                               <  2:1475968/150‑1 (MQ=255)
                                                                         aatacgtgtactaccagcaaccagcgatacattgcgcccctgccacaagtgcgcctgctcccactcctcctggaatGCGTCATCGCCGCTACGGCTTTGCCGCATTCCagga                                                                                                                    >  1:594321‑M1/77‑112 (MQ=255)
                                                                         aatacgtgtactaccagcaaccagcgatacattgcgcccctgccacaagtgcgcctgctcccactcctcctggaatGCGTCATCGCCGCCACGGCTTTGCCGCATTCCagga                                                                                                                    <  2:594321‑M1/36‑1 (MQ=255)
                                                                                 gTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGcgg                                                                      >  1:980172/1‑148 (MQ=255)
                                                                                      tGCAGCCATAGATCGCAAACACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGTAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGc                                                                 <  1:252670/150‑1 (MQ=255)
                                                                                        cAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTg                                                               <  1:1229619/150‑1 (MQ=255)
                                                                                          gCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTCCGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGgt                                                             >  1:1267332/1‑150 (MQ=255)
                                                                                             aTAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTc                                                                                                                                                   <  1:107929/61‑1 (MQ=255)
                                                                                             aTAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTc                                                                                                                                                   >  2:107929/1‑61 (MQ=255)
                                                                                             aTAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGgtagt                                                          >  2:847704/1‑150 (MQ=255)
                                                                                                 aTCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTCGTGACAAAGGCGCCAGGAATCGCGGGATGGTGGTAGTacac                                                      >  2:1173158/1‑150 (MQ=255)
                                                                                                          aCTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCagga                                                                                                                    <  2:232029/79‑1 (MQ=255)
                                                                                                          aCTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCagga                                                                                                                    >  1:232029/1‑79 (MQ=255)
                                                                                                          aCTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATg                                             >  1:682425/1‑150 (MQ=255)
                                                                                                            ttGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAgg                                                                                       <  1:380070/106‑1 (MQ=255)
                                                                                                            ttGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAgg                                                                                       >  2:380070/1‑106 (MQ=255)
                                                                                                                 cgcgCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATGGCGTGGt                                      >  1:666051/1‑150 (MQ=255)
                                                                                                                       gctCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATGGCGTGGTTCTTgg                                <  1:847704/150‑1 (MQ=255)
                                                                                                                        ctCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAgggg                                                                                     <  1:1512415/96‑1 (MQ=255)
                                                                                                                        ctCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAgggg                                                                                     >  2:1512415/1‑96 (MQ=255)
                                                                                                                        ctCAGTCAGCAGCTACAGCACGAATTGGCGCGTCAGCGCCGCTACGGCTTTGCTGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATGGCGTGGTTCTTGGc                               <  2:44079/150‑1 (MQ=255)
                                                                                                                            gtcagCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATGGCGTGGTTCTTGGCGTCg                           >  2:1100528/1‑150 (MQ=255)
                                                                                                                                gcagcTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGAAGATCTTGGCGCGGAGTCGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGGTGCTGGTAGTACACGTATTGATGGCGTGGTTCTTGGCGTCGACgg                       >  1:850032/1‑150 (MQ=255)
                                                                                                                                 cagcTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTa                                                                            >  1:1298055/1‑96 (MQ=255)
                                                                                                                                 cagcTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTa                                                                            <  2:1298055/96‑1 (MQ=255)
                                                                                                                                   gcTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATGGCGTGGTTCTTGGCGTCGACGGGCa                    >  1:552545/1‑150 (MQ=255)
                                                                                                                                    cTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATGGCGTGGTTCTTGGCGTCGACGGGCAg                   >  1:404013/1‑150 (MQ=255)
                                                                                                                                    cTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATGGCGTGGTTCTTGGCGTCGACGGGCAg                   >  1:806412/1‑150 (MQ=255)
                                                                                                                                        aGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGCTGGCGTGGTTCTTGGCGTCGACGGGCAGggtg               >  2:377829/1‑150 (MQ=255)
                                                                                                                                         gCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATGGCGTGGTTCTTGGCGTCGACGGGCAGggtgg              >  1:438466/1‑150 (MQ=255)
                                                                                                                                          cACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGc                                                                 >  1:1112057/1‑98 (MQ=255)
                                                                                                                                          cACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGc                                                                 <  2:1112057/98‑1 (MQ=255)
                                                                                                                                          cACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCt                                                                >  2:1097190/1‑99 (MQ=255)
                                                                                                                                          cACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCt                                                                <  1:1097190/99‑1 (MQ=255)
                                                                                                                                          cACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATGGCGTGGTTCTTGGCGTCGACGGGCAGggtggt             >  1:270502/1‑150 (MQ=255)
                                                                                                                                             gAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATGGCGTGGTTCTTGGCGTCGACGGGCAGGGTGGTTTg          >  1:587319/1‑150 (MQ=255)
                                                                                                                                                   gcgcGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATGGCGTGGTTCTTGGCGTCGACGGGCAGGGTGGTTTGCGCCtt    <  1:948610/150‑1 (MQ=255)
                                                                                                                                                     GCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGgc                                                                                    <  1:764671‑M1/68‑1 (MQ=255)
                                                                                                                                                     GCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGgc                                                                                    >  2:764671‑M1/1‑68 (MQ=255)
                                                                                                                                                     GCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATGGAGGCCGTCTTGGCGTCGACGGGCAGGGTGGTTTGCGCCTTGa  <  1:499547‑M1/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GTGGTGCTAGGCATTGGTATCAATGTAAACATGCAGGTGAACGAACAGGTCGATCAGCAGTGGACTTCTATGCGGCGTGAGGTTGGTGCAGCCATAGATCGCAATCACTTGGTCGCGCTGCTCAGTCAGCAGCTACAGCACGAATTGGCGCGTCATCGCCGCTACGGCTTTGCCGCATTCCAGGAGGAGTGGGAGCAGGCGCACTTGTGGCAGGGGCGCAATGTATCGCTGGTTGCTGGTAGTACACGTATTGATGGCGTGGTTCTTGGCGTCGACGGGCAGGGTGGTTTGCGCCTTGA  >  NC_002947/530684‑530982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.