New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3102573	38 (0.630)	6 (0.110)	5/222	NT	13.6%	coding (361/642 nt)	PP_2712	hypothetical protein
	?	NC_002947	= 3102593	41 (0.740)					coding (381/642 nt)	PP_2712	hypothetical protein

TGATCTGGGAGGGCATCATCAACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGC  >  NC_002947/3102424‑3102720                                                                                                                                                      |                                                                                                                                                    tGATCTGGGAGGGCATCATCAACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGG                                                                                                                                                     <  1:51266‑M1/150‑1 (MQ=255) tGATCTGGGAGGGCATCATCAACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCAAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGG                                                                                                                                                     <  1:682639‑M1/150‑1 (MQ=255)       gggAGGGCATCATCAACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGc                                                                                                                                               >  2:652518/1‑150 (MQ=255)        ggAGGGCATCATCAACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCt                                                                                                                                              <  2:829130/150‑1 (MQ=255)             gCATCATCAACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATg                                                                                                                                         <  2:434252/150‑1 (MQ=255)                  atcaACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAg                                                                                                                                    <  1:59233/150‑1 (MQ=255)                   tcaACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGcacctggtcatacagcgt                                                                                                                                   >  1:524646‑M1/1‑132 (MQ=255)                    caACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGt                                                                                                                                  <  2:1409210/150‑1 (MQ=255)                            gTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGccaggct                                                                                                                          >  2:871577‑M2/1‑143 (MQ=255)                             ttGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGccaggctg                                                                                                                         >  2:1261022‑M2/1‑142 (MQ=255)                              tGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGccaggctgg                                                                                                                        >  2:1479794‑M2/1‑141 (MQ=255)                               gggCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGcacctggtcatacagcgtgcccaggctggt                                                                                                                       <  2:524646‑M1/150‑31 (MQ=255)                                             ggTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCTGTTTCGGt                                                                                                         <  2:1505014/150‑1 (MQ=255)                                                   cTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGt                                                                                                         <  1:221207/144‑1 (MQ=255)                                                   cTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGt                                                                                                         >  2:221207/1‑144 (MQ=255)                                                          cACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATgg                                                                                            >  2:1270819/1‑150 (MQ=255)                                                           aCTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGt                                                                                                         <  1:145107/136‑1 (MQ=255)                                                           aCTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGAACCCCCCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGt                                                                                                         >  2:145107/1‑136 (MQ=255)                                                             tGGGCAAGGTTAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGAAGCCGAGAtagtcg                                                                                         >  2:292142/1‑145 (MQ=255)                                                                  aaGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGa                                                                                                       <  2:1438279/131‑1 (MQ=255)                                                                  aaGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGa                                                                                                       >  1:1438279/1‑131 (MQ=255)                                                                        aaGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGcacctggtcatacagcgtgcccaggctggt                                                                                                                       <  1:173888‑M1/109‑31 (MQ=255)                                                                        aaGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGcacctggtcatacagcgtgcccaggctggt                                                                                                                       >  2:173888‑M1/1‑79 (MQ=255)                                                                         aGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGc                                                                                                                       >  2:827774/1‑108 (MQ=255)                                                                         aGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGc                                                                                                                       <  1:827774/108‑1 (MQ=255)                                                                             ggcgAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCg                                                                                                           <  2:97590/116‑1 (MQ=255)                                                                             ggcgAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCg                                                                                                           >  1:97590/1‑116 (MQ=255)                                                                                gAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTAt                                                                                                                                          <  1:1584831/82‑1 (MQ=255)                                                                                gAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTAt                                                                                                                                          >  2:1584831/1‑82 (MQ=255)                                                                                    gCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTg                                                                  <  1:1356444/150‑1 (MQ=255)                                                                                        gCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGa                                                              <  1:795795/150‑1 (MQ=255)                                                                                          cTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGcacctggtcatacagcgtgcccaggc                                                                                                                           <  2:1393139‑M1/87‑27 (MQ=255)                                                                                          cTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGcacctggtcatacagcgtgcccaggc                                                                                                                           >  1:1393139‑M1/1‑61 (MQ=255)                                                                                            ggAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCa                                                                                                                                     >  2:614628/1‑75 (MQ=255)                                                                                            ggAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCa                                                                                                                                     <  1:614628/75‑1 (MQ=255)                                                                                             gAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAAc                                                         <  1:652518/150‑1 (MQ=255)                                                                                              aGCAGTCCATGAAATTGGACCCCGCCGCCTTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGTTTTTGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAAcc                                                        <  1:292142/150‑1 (MQ=255)                                                                                                  gggcATGAAATTGGACCGCGCCGCCCTGCAAGGTTGGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCaa                                                    <  2:151028/147‑1 (MQ=255)                                                                                                     cATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACgg                                                 >  1:1427913/1‑150 (MQ=255)                                                                                                     cATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGATTACACCAGCCTGGGCACGCTGTATGACCAGGGGCCAGGCTGGCCTATCGGTTTCAGTGATGCGGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAAAgg                                                 >  1:647317/1‑150 (MQ=255)                                                                                                         aaaTTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATc                                             <  1:65723/150‑1 (MQ=255)                                                                                                                  cccGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAAc                                    >  2:1269372/1‑150 (MQ=255)                                                                                                                            tGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTg                            <  2:1616156/148‑1 (MQ=255)                                                                                                                            tGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTg                            >  1:1616156/1‑148 (MQ=255)                                                                                                                                       gCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCTGAGATGGCCGACAAGAtgct                                                                               >  2:1248144/1‑86 (MQ=255)                                                                                                                                       gCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCTGAGATGGCCGACAAGAtgct                                                                               <  1:1248144/86‑1 (MQ=255)                                                                                                                                        cTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGt              >  2:1202736/1‑150 (MQ=255)                                                                                                                                         ttACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTa             >  2:194402/1‑150 (MQ=255)                                                                                                                                             acCAGCCTGGGCACGCTGTATGACCAGGTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgaggccacccgtcgcccccgccc         <  2:524646‑M2/150‑121 (MQ=255)                                                                                                                                             acCAGCCTGGGCACGCTGTATGACCAGGTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgcctt                                                  >  2:173888‑M2/1‑30 (MQ=255)                                                                                                                                             acCAGCCTGGGCACGCTGTATGACCAGGTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgcctt                                                  <  1:173888‑M2/109‑80 (MQ=255)                                                                                                                                              ccAGCCTGGcacctggtcatacagcgtgcccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgaggccacccgtcgcccccgccca        >  2:1479794‑M1/1‑9 (MQ=255)                                                                                                                                              ccAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGc        >  2:1564971/1‑150 (MQ=255)                                                                                                                                               cAGCCTGGcacctggtcatacagcgtgcccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgaggccacccgtcgcccccgcccaa       >  2:1261022‑M1/1‑8 (MQ=255)                                                                                                                                                aGCCTGGcacctggtcatacagcgtgcccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgaggccacccgtcgcccccgcccaac      >  2:871577‑M1/1‑7 (MQ=255)                                                                                                                                                 gCCTGGGCACGCTGTATGACCAGGTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccag                                                                    <  2:1393139‑M2/87‑62 (MQ=255)                                                                                                                                                 gCCTGGGCACGCTGTATGACCAGGTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccag                                                                    >  1:1393139‑M2/1‑26 (MQ=255)                                                                                                                                                    tGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAgc  <  1:1202736/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    TGATCTGGGAGGGCATCATCAACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGC  >  NC_002947/3102424‑3102720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.