New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3102573	38 (0.630)	6 (0.110)	5/222	NT	13.6%	coding (361/642 nt)	PP_2712	hypothetical protein
	?	NC_002947	= 3102593	41 (0.740)					coding (381/642 nt)	PP_2712	hypothetical protein

GTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGCGCTACCCTGAAGCTACCGCC  >  NC_002947/3102451‑3102740                                                                                                                                               |                                                                                                                                                    gTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGccaggct                                                                                                                                              >  2:871577‑M2/1‑143 (MQ=255)  ttGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGccaggctg                                                                                                                                             >  2:1261022‑M2/1‑142 (MQ=255)   tGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGccaggctgg                                                                                                                                            >  2:1479794‑M2/1‑141 (MQ=255)                  ggTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCTGTTTCGGt                                                                                                                             <  2:1505014/150‑1 (MQ=255)                        cTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGt                                                                                                                             >  2:221207/1‑144 (MQ=255)                        cTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGt                                                                                                                             <  1:221207/144‑1 (MQ=255)                               cACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATgg                                                                                                                >  2:1270819/1‑150 (MQ=255)                                aCTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGt                                                                                                                             <  1:145107/136‑1 (MQ=255)                                aCTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGAACCCCCCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGt                                                                                                                             >  2:145107/1‑136 (MQ=255)                                  tGGGCAAGGTTAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGAAGCCGAGAtagtcg                                                                                                             >  2:292142/1‑145 (MQ=255)                                       aaGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGa                                                                                                                           <  2:1438279/131‑1 (MQ=255)                                       aaGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGa                                                                                                                           >  1:1438279/1‑131 (MQ=255)                                              aGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGc                                                                                                                                           >  2:827774/1‑108 (MQ=255)                                              aGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGc                                                                                                                                           <  1:827774/108‑1 (MQ=255)                                                  ggcgAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCg                                                                                                                               <  2:97590/116‑1 (MQ=255)                                                  ggcgAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCg                                                                                                                               >  1:97590/1‑116 (MQ=255)                                                         gCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTg                                                                                      <  1:1356444/150‑1 (MQ=255)                                                             gCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGa                                                                                  <  1:795795/150‑1 (MQ=255)                                                                  gAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAAc                                                                             <  1:652518/150‑1 (MQ=255)                                                                   aGCAGTCCATGAAATTGGACCCCGCCGCCTTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGTTTTTGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAAcc                                                                            <  1:292142/150‑1 (MQ=255)                                                                       gggcATGAAATTGGACCGCGCCGCCCTGCAAGGTTGGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCaa                                                                        <  2:151028/147‑1 (MQ=255)                                                                          cATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACgg                                                                     >  1:1427913/1‑150 (MQ=255)                                                                          cATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGATTACACCAGCCTGGGCACGCTGTATGACCAGGGGCCAGGCTGGCCTATCGGTTTCAGTGATGCGGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAAAgg                                                                     >  1:647317/1‑150 (MQ=255)                                                                              aaaTTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATc                                                                 <  1:65723/150‑1 (MQ=255)                                                                                       cccGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAAc                                                        >  2:1269372/1‑150 (MQ=255)                                                                                                 tGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTg                                                <  2:1616156/148‑1 (MQ=255)                                                                                                 tGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTg                                                >  1:1616156/1‑148 (MQ=255)                                                                                                            gCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCTGAGATGGCCGACAAGAtgct                                                                                                   <  1:1248144/86‑1 (MQ=255)                                                                                                            gCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCTGAGATGGCCGACAAGAtgct                                                                                                   >  2:1248144/1‑86 (MQ=255)                                                                                                             cTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGt                                  >  2:1202736/1‑150 (MQ=255)                                                                                                              ttACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTa                                 >  2:194402/1‑150 (MQ=255)                                                                                                                  acCAGCCTGGGCACGCTGTATGACCAGGTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgaggccacccgtcgcccccgccc                             <  2:524646‑M2/150‑121 (MQ=255)                                                                                                                  acCAGCCTGGGCACGCTGTATGACCAGGTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgcctt                                                                      >  2:173888‑M2/1‑30 (MQ=255)                                                                                                                  acCAGCCTGGGCACGCTGTATGACCAGGTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgcctt                                                                      <  1:173888‑M2/109‑80 (MQ=255)                                                                                                                   ccAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGc                            >  2:1564971/1‑150 (MQ=255)                                                                                                                      gCCTGGGCACGCTGTATGACCAGGTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccag                                                                                        >  1:1393139‑M2/1‑26 (MQ=255)                                                                                                                      gCCTGGGCACGCTGTATGACCAGGTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccag                                                                                        <  2:1393139‑M2/87‑62 (MQ=255)                                                                                                                         tGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAgc                      <  1:1202736/150‑1 (MQ=255)                                                                                                                             cACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGCGCTa                  >  1:1342929/1‑150 (MQ=255)                                                                                                                              aCGCTGTATGACCAGGTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgaggccacccgtcgcccccgcccaactgctgttga                 >  1:524646‑M2/1‑18 (MQ=255)                                                                                                                               cGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGCGCTAcc                <  2:1342929/150‑1 (MQ=255)                                                                                                                               cGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGCGCTAcc                <  2:1427913/150‑1 (MQ=255)                                                                                                                                  tGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGa                                                                                                       <  1:919759/60‑1 (MQ=255)                                                                                                                                  tGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGa                                                               <  1:400406/100‑1 (MQ=255)                                                                                                                                  tGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGa                                                               >  2:400406/1‑100 (MQ=255)                                                                                                                                  tGTATGACCAGGTGCCAGGCTGGCCTATCGGTTGCGGTGATGCCGAGATGGCCGACAAGa                                                                                                       >  2:919759/1‑60 (MQ=255)                                                                                                                                      tGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGatcatc                                     >  2:775326/1‑122 (MQ=255)                                                                                                                                      tGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGatcatc                                     <  1:775326/122‑1 (MQ=255)                                                                                                                                       gACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGCGCTACCCTGAAGCt        >  2:1615467/1‑150 (MQ=255)                                                                                                                                       gACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCAAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGGGCTAGCATGAAGCt        >  2:791539/1‑150 (MQ=255)                                                                                                                                         ccAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGCGCTACCCTGAAGCTAc      >  1:575346/1‑150 (MQ=255)                                                                                                                                         ccAGGTGCCAGGCTGGCCTAGCTGTTTCGGTGATGCCAAGATGGCCGAAAAGATGCTGCGCACAGCCTTGCAGATCAAGCCAAACGCTATCCACAGCAACTATTTCTGGACCGATCATCTGTCTCGAAAGAAGCGCTACACTGAACCTAc      >  2:312244/1‑150 (MQ=255)                                                                                                                                            ggTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTgg                                               >  2:987336/1‑106 (MQ=255)                                                                                                                                            ggTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTgg                                               <  1:987336/106‑1 (MQ=255)                                                                                                                                             gTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGCTCATCTGTATCGGCAGAAGCGCTACCCTGAAGCTAccgcc  <  1:1564971/150‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    GTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCCGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGCGCTACCCTGAAGCTACCGCC  >  NC_002947/3102451‑3102740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.