New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3523465	NA (NA)	3 (0.050)	3/228	NT	NA	coding (135/1533 nt)	PP_3114	transposase
	?	NC_002947	= 3523493	NA (NA)					coding (163/1533 nt)	PP_3114	transposase

ATGATTTCCATGCCCGAAAACCTCCCTGACGATCCGGTTCTGCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAGCGCTTGTTCGGGCGCAAGACCGAGCAGACTGGC  >  NC_002947/3523331‑3523498                                                                                                                                       |                                  atcaTTTCCATACCCGAAAACCCCCCATACGATCCGCTTCTTCTCAAGCAACTGCTTGAGCAGATGATCCACAAGCCCTCTTCCGACAAGAACAAGATCTTTCATCTCGAAGAGGAAGTTGCCCTGTTGCTCCAGCGCTAGTTCGGgcgc                    <  2:478578/147‑1 (MQ=1)                                       tccgCTCAAGCAGTTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAGCGCTTGTTCGGGCGCAAGACCGAGCAGACTGGc  >  1:1558228/4‑130 (MQ=0)                                                                                                                                       |                                  ATGATTTCCATGCCCGAAAACCTCCCTGACGATCCGGTTCTGCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAGCGCTTGTTCGGGCGCAAGACCGAGCAGACTGGC  >  NC_002947/3523331‑3523498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.