New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3839412 =	41 (0.680)	6 (0.110)	6/226	NT	13.4%	coding (292/1158 nt)	PP_3389	membrane protein
	?	NC_002947	3839436 =	39 (0.690)					coding (316/1158 nt)	PP_3389	membrane protein

TAAGTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGA  >  NC_002947/3839272‑3839561                                                                                                                                             |                                                                                                                                                      tAAGTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCCGCCTCATTACGCTACTCACGATCGGCGCCGTGCTGCCTGGGATAATTTTCGGAACCGGCa                                                                                                                                              <  2:186713/150‑1 (MQ=255)    gTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAg                                                                                                                                           >  1:764958/1‑150 (MQ=255)             agtcgcgagatttttacgccgtacttcaggtaaaaatacaatgctgcgcctgaagctgaagccaatagagctgtaagtatgactgctataaaggagattgaataaggttgagtgatatcaagccagatGGAACCGGCATAGCTGTCGGtt                                                                                                                                  <  1:13117‑M1/22‑1 (MQ=255)                tCATACGCGGCCCTGTATATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCa                                                                                                                               >  2:1471190/1‑150 (MQ=255)                  aTACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATc                                                                                                                             <  2:1459874/150‑1 (MQ=255)                                 tATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACt                                                                                                              <  2:382198/150‑1 (MQ=255)                                   tGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTc                                                                                                             <  2:454827/149‑1 (MQ=255)                                   tGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTc                                                                                                             >  1:454827/1‑149 (MQ=255)                                     cATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAAc                                                                                                          <  1:711657/150‑1 (MQ=255)                                      atgaaaTTAAACCCATATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAAcc                                                                                                         <  2:1582701/146‑1 (MQ=255)                                      aTTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCg                                                                                                                                                       >  1:482430/1‑104 (MQ=255)                                      aTTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCg                                                                                                                                                       <  2:482430/104‑1 (MQ=255)                                       ttCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCt                                                                                                        >  2:1513602/1‑150 (MQ=255)                                         cAATGAAACCCCCCTAGCACTGCGATGTGGCGGCCCACACGACAAGCGCGGCCTGGTTACGCTAGTCACTATCGTGGGGGTGCTGCCTGGGATGATTTTCGGAACCGTCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCttc                                                                                                      <  1:1471190/150‑2 (MQ=255)                                          aaTGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTAt                                                                                                     >  1:1035229/1‑150 (MQ=255)                                           aTGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCt                                                                                                                            <  1:415069/126‑1 (MQ=255)                                           aTGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCt                                                                                                                            >  2:415069/1‑126 (MQ=255)                                           aTGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTAtt                                                                                                    <  2:104818/150‑1 (MQ=255)                                              aaaCCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCaa                                                                                                 <  2:764958/150‑1 (MQ=255)                                                  ccACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAAtctc                                                                                             >  1:635417/1‑150 (MQ=255)                                                      aTGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCttt                                                                                         >  1:1296703/1‑150 (MQ=255)                                                              gcgcTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGt                                                                                 <  1:1513602/150‑1 (MQ=255)                                                              gcgcTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGt                                                                                 <  2:723998/150‑1 (MQ=255)                                                                      gcggcTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCAc                                                                                                               >  2:274695/1‑112 (MQ=255)                                                                      gcggcTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCAc                                                                                                               <  1:274695/112‑1 (MQ=255)                                                                          cTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGc                                                                     >  2:371759/1‑150 (MQ=255)                                                                           tCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGct                                                                    >  1:623228/1‑150 (MQ=255)                                                                           tCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATAGGCGGGGGGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGct                                                                    >  1:1605428/1‑150 (MQ=255)                                                                                 gagaagCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTa                                                                         >  1:205629/1‑139 (MQ=255)                                                                                 gagaagCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTa                                                                         <  2:205629/139‑1 (MQ=255)                                                                                      gcgcGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGgcttc                                                         <  2:635417/150‑1 (MQ=255)                                                                                      gcgcGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGgcttc                                                         >  1:851608/1‑150 (MQ=255)                                                                                              tCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGcttcagcttcag                                                 >  2:376142/1‑150 (MQ=255)                                                                                                tgctataaaggagattgaataaggttgagtgatatcaagccagacGGAACCGGCATAGCTGTCGGtt                                                                                                                                  <  1:330940‑M1/22‑1 (MQ=255)                                                                                                tgctataaaggagattgaataaggttgagtgatatcaagccagacGGAACCGGCATAGCTGTCGGtt                                                                                                                                  >  2:330940‑M1/46‑67 (MQ=255)                                                                                                 ttACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGgcg                                              >  2:1392667/1‑150 (MQ=255)                                                                                                        aGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCAtt                                       <  2:1035229/150‑1 (MQ=255)                                                                                                         gTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCtt                                                                                          <  2:771253/98‑1 (MQ=255)                                                                                                         gTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCtt                                                                                          >  1:771253/1‑98 (MQ=255)                                                                                                              gATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTAttt                                 >  2:1541364/1‑150 (MQ=255)                                                                                                              gATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTAttt                                 >  1:24838/1‑150 (MQ=255)                                                                                                                  ggcggGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATCGCAGTCATACTTACCGCTCTATTGGCTTCAGCTCCAGGCGCAGTGTTGTtttttttc                             <  2:1296703/150‑3 (MQ=255)                                                                                                                        ttgagtgatatcaagccagatGGAACCGACAGCTATGCCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAg                       <  2:13117‑M1/129‑1 (MQ=255)                                                                                                                               cTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTAtt                                                               <  1:660942/103‑1 (MQ=255)                                                                                                                               cTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTAtt                                                               >  2:660942/1‑103 (MQ=255)                                                                                                                                 atcaagccagatGGAACCGACAGCTATGCCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGgc                                                            <  2:1473195‑M1/92‑1 (MQ=255)                                                                                                                                 atcaagccagatGGAACCGACAGCTATGCCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGgc                                                            >  1:1473195‑M1/13‑104 (MQ=255)                                                                                                                                     tAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTa                                                                                                      <  1:116077/58‑1 (MQ=255)                                                                                                                                     tAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTa                                                                                                      >  2:116077/1‑58 (MQ=255)                                                                                                                                          ttCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTcg     >  1:798961/1‑150 (MQ=255)                                                                                                                                             GGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGa  >  2:623228‑M1/1‑150 (MQ=255)                                                                                                                                             GGAACCGGCATAGATGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGa  <  2:965441‑M1/150‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                      TAAGTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGA  >  NC_002947/3839272‑3839561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.