New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3839412 =	41 (0.680)	6 (0.110)	6/226	NT	13.4%	coding (292/1158 nt)	PP_3389	membrane protein
	?	NC_002947	3839436 =	39 (0.690)					coding (316/1158 nt)	PP_3389	membrane protein

TCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACTGGAAATGCTGACCAGTCGGCAT  >  NC_002947/3839287‑3839585                                                                                                                                                      |                                                                                                                                                      tCATACGCGGCCCTGTATATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCa                                                                                                                                                       >  2:1471190/1‑150 (MQ=255)   aTACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATc                                                                                                                                                     <  2:1459874/150‑1 (MQ=255)                  tATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACt                                                                                                                                      <  2:382198/150‑1 (MQ=255)                    tGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTc                                                                                                                                     <  2:454827/149‑1 (MQ=255)                    tGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTc                                                                                                                                     >  1:454827/1‑149 (MQ=255)                     cttcaggtaaaaatacaatgctgcgcctgaagctgaagccaatagagctgtaagtatgactgctataaaggagattgaataaggttgagtgatatcaagccagatggaaccggcatagctgtcggttccATCTGGCTTGATATCACTCaa                                                                                                                                   <  2:13117‑M2/21‑1 (MQ=255)                      cATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAAc                                                                                                                                  <  1:711657/150‑1 (MQ=255)                       atgaaaTTAAACCCATATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAAcc                                                                                                                                 <  2:1582701/146‑1 (MQ=255)                        ttCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCt                                                                                                                                >  2:1513602/1‑150 (MQ=255)                          cAATGAAACCCCCCTAGCACTGCGATGTGGCGGCCCACACGACAAGCGCGGCCTGGTTACGCTAGTCACTATCGTGGGGGTGCTGCCTGGGATGATTTTCGGAACCGTCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCttc                                                                                                                              <  1:1471190/150‑2 (MQ=255)                           aaTGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTAt                                                                                                                             >  1:1035229/1‑150 (MQ=255)                            aTGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCt                                                                                                                                                    >  2:415069/1‑126 (MQ=255)                            aTGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCt                                                                                                                                                    <  1:415069/126‑1 (MQ=255)                            aTGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTAtt                                                                                                                            <  2:104818/150‑1 (MQ=255)                               aaaCCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCaa                                                                                                                         <  2:764958/150‑1 (MQ=255)                                   ccACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAAtctc                                                                                                                     >  1:635417/1‑150 (MQ=255)                                       aTGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCttt                                                                                                                 >  1:1296703/1‑150 (MQ=255)                                               gcgcTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGt                                                                                                         <  1:1513602/150‑1 (MQ=255)                                               gcgcTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGt                                                                                                         <  2:723998/150‑1 (MQ=255)                                                       gcggcTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCAc                                                                                                                                       >  2:274695/1‑112 (MQ=255)                                                       gcggcTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCAc                                                                                                                                       <  1:274695/112‑1 (MQ=255)                                                          gccaatagagctgtaagtatgactgctataaaggagattgaataaggttgagtgatatcaagccagatggaaccggcatagctgtcggttccATCTGGCTTGat                                                                                                                                            <  2:1473195‑M2/12‑1 (MQ=255)                                                          gccaatagagctgtaagtatgactgctataaaggagattgaataaggttgagtgatatcaagccagatggaaccggcatagctgtcggttccATCTGGCTTGat                                                                                                                                            >  1:1473195‑M2/93‑104 (MQ=255)                                                           cTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGc                                                                                             >  2:371759/1‑150 (MQ=255)                                                            tCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGct                                                                                            >  1:623228/1‑150 (MQ=255)                                                            tCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATAGGCGGGGGGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGct                                                                                            >  1:1605428/1‑150 (MQ=255)                                                                  gagaagCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTa                                                                                                 <  2:205629/139‑1 (MQ=255)                                                                  gagaagCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTa                                                                                                 >  1:205629/1‑139 (MQ=255)                                                                       gcgcGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGgcttc                                                                                 >  1:851608/1‑150 (MQ=255)                                                                       gcgcGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGgcttc                                                                                 <  2:635417/150‑1 (MQ=255)                                                                               tCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGcttcagcttcag                                                                         >  2:376142/1‑150 (MQ=255)                                                                                  ttACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGgcg                                                                      >  2:1392667/1‑150 (MQ=255)                                                                                         aGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCAtt                                                               <  2:1035229/150‑1 (MQ=255)                                                                                          gTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCtt                                                                                                                  >  1:771253/1‑98 (MQ=255)                                                                                          gTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCtt                                                                                                                  <  2:771253/98‑1 (MQ=255)                                                                                               gATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTAttt                                                         >  2:1541364/1‑150 (MQ=255)                                                                                               gATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTAttt                                                         >  1:24838/1‑150 (MQ=255)                                                                                                   ggcggGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATCGCAGTCATACTTACCGCTCTATTGGCTTCAGCTCCAGGCGCAGTGTTGTtttttttc                                                     <  2:1296703/150‑3 (MQ=255)                                                                                                         ttgagtgatatcaagccagatGGAACCGACAGCTATGCCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAg                                               <  2:13117‑M1/129‑1 (MQ=255)                                                                                                                cTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTAtt                                                                                       >  2:660942/1‑103 (MQ=255)                                                                                                                cTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTAtt                                                                                       <  1:660942/103‑1 (MQ=255)                                                                                                                  atcaagccagatGGAACCGACAGCTATGCCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGgc                                                                                    <  2:1473195‑M1/92‑1 (MQ=255)                                                                                                                  atcaagccagatGGAACCGACAGCTATGCCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGgc                                                                                    >  1:1473195‑M1/13‑104 (MQ=255)                                                                                                                      tAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTa                                                                                                                              <  1:116077/58‑1 (MQ=255)                                                                                                                      tAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTa                                                                                                                              >  2:116077/1‑58 (MQ=255)                                                                                                                           ttCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTcg                             >  1:798961/1‑150 (MQ=255)                                                                                                                              GGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGa                          >  2:623228‑M1/1‑150 (MQ=255)                                                                                                                              GGAACCGGCATAGATGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGa                          <  2:965441‑M1/150‑1 (MQ=255)                                                                                                                                aaccgacagctatgccggttccGTCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCa                                                                                                           >  2:330940‑M2/23‑67 (MQ=255)                                                                                                                                aaccgacagctatgccggttccGTCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCa                                                                                                           <  1:330940‑M2/45‑1 (MQ=255)                                                                                                                                aaccgacagctatgccggttccATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACt                        <  1:13117‑M2/128‑1 (MQ=255)                                                                                                                                AACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAACTCTCGAGacc                        <  2:588942‑M1/150‑2 (MQ=255)                                                                                                                                 ACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACTg                       >  2:1605428‑M1/1‑150 (MQ=255)                                                                                                                                  CCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTGTTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACTgg                      <  1:587866‑M1/150‑1 (MQ=255)                                                                                                                                  CCGGAATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCCGGCATACTTACACACCTATTGGCTTCAGATTCAGGCGTAGCATTGTATTTGTACCTGAAGTACGGCGTAAAAATCTCGCGACTgg                      >  1:371759‑M1/1‑150 (MQ=255)                                                                                                                                       aTAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACTGGAAATg                 <  1:965441/150‑1 (MQ=255)                                                                                                                                         aGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACTGGAAAt                  >  2:1437777/1‑147 (MQ=255)                                                                                                                                         aGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACTGGAAAt                  <  1:1437777/147‑1 (MQ=255)                                                                                                                                           cTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACTGGAAATGCTGa             >  2:1201872/1‑150 (MQ=255)                                                                                                                                           cTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACTGGAAATGCTGa             <  1:376142/150‑1 (MQ=255)                                                                                                                                           cTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACTGGAAATGCTGa             <  1:1541364/150‑1 (MQ=255)                                                                                                                                              tCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTAc                                                                                                <  2:1231415/64‑1 (MQ=255)                                                                                                                                              tCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTAc                                                                                                >  1:1231415/1‑64 (MQ=255)                                                                                                                                                      aTCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACTGGAAATGCTGACCAGTCGGCAt  >  2:1209794/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      TCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGCTGTCGGTTCCATCTGGCTTGATATCACTCAACCTTATTCAATCTCCTTTATAGCAGTCATACTTACAGCTCTATTGGCTTCAGCTTCAGGCGCAGCATTGTATTTTTACCTGAAGTACGGCGTAAAAATCTCGCGACTGGAAATGCTGACCAGTCGGCAT  >  NC_002947/3839287‑3839585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.