New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3947984	35 (0.580)	3 (0.070)	3/184	NT	7.6%	coding (109/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	= 3948013	46 (1.000)					coding (80/1797 nt)	PP_3483	type II secretion system protein

GGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGG  >  NC_002947/3947835‑3948129                                                                                                                                                      |                                                                                                                                                  ggTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGG                                                                                                                                                   >  2:335120‑M1/1‑150 (MQ=255)    gAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTAc                                                                                                                                                <  1:335120/150‑1 (MQ=255)                       caggccaggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTg                                                                                                                             <  2:1444612/150‑1 (MQ=255)                           ccaggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATa                                                                                                                         <  2:917204/150‑1 (MQ=255)                           ccaggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATa                                                                                                                         >  2:799602/1‑150 (MQ=255)                           ccaggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATa                                                                                                                         >  2:799490/1‑150 (MQ=255)                                    gatctcagtcgAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtg                                                                                                                >  2:1519195‑M2/6‑144 (MQ=255)                                     cAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTATACCTAGATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgg                                                                                                               >  1:848960‑M2/1‑143 (MQ=255)                                     cAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgg                                                                                                               >  1:1584721‑M2/1‑143 (MQ=255)                                      aGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtggg                                                                                                              <  1:1011233‑M2/150‑9 (MQ=255)                                          aGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcg                                                                                                          <  1:581182‑M1/150‑42 (MQ=255)                                          aGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGACTGGCTAAGGAGGACGCGGGGGTAGGCGGAAAGTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtggagatc                                                                                                          <  1:1519195‑M2/150‑13 (MQ=255)                                           ggcgaGCAGGCGCTCGTCAGTTGCTTGCAGACGGGCCTGGGCCAGGAGGTGGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgg                                                                                                         >  2:595146‑M2/3‑137 (MQ=255)                                           gTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgg                                                                                                         >  1:799490‑M2/1‑137 (MQ=255)                                           gTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgg                                                                                                         >  1:799602‑M2/1‑137 (MQ=255)                                              gAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCCACCACGAGTACATCAAAGGTCTGTGGGCTGCATACATcctgtcggagcgggcc                                                                                                      <  2:543823‑M2/150‑17 (MQ=255)                                                gacggagcTCGTGGGGGGGTTGCAGGCGGGGCTGGGCCAGGGGGTCGCGGGGGTAGGCGGAAATGTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATg                                                                                                    <  2:335557/144‑1 (MQ=38)                                                 cAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTCGGCTGCATACATcctgtgggagcgggcatgc                                                                                                   >  2:1011233‑M2/1‑131 (MQ=255)                                                        tCGTCAGTGGCTTGCAGACGGGGCTGCGCCAGGAGGCCGGGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCGCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaa                                                                                            >  2:956427‑M2/1‑124 (MQ=255)                                                                  cttcaaGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAACAGTGGGCTGGGTTCTTCGCGGGCATCCCCGCTCCCACAGGTACATCACAGGTCCGTGGGCTGCATACCTCCTGTGGGAGCGAGCATGCCAGCGAAGCCGCCGGTg                                                                                  >  2:1143145/6‑150 (MQ=255)                                                                      cAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATc                                                                                                                                             >  2:323735/1‑87 (MQ=255)                                                                      cAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATc                                                                                                                                             <  1:323735/87‑1 (MQ=255)                                                                                   gCCAGGAGGTCGCGGGGGTAGGAGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCGACAGGTATATCACAGGTCTGTGGTCTGCATACATCCTGAGGGATCGGGCATGGGCGCAGAGAGGTCGGGGCAGGCTTTGCAGATTcc                                                                 >  2:837735/1‑150 (MQ=255)                                                                                     cAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCGGCCACAGGTACACAACAGATCTGTGGGCTGGAAAGATAGTGATGAGGGGTGCGTCCCCGCGAGGACGTGGGGGCAGGCTTTGCAGAATCCgg                                                               >  2:457478/1‑150 (MQ=255)                                                                                        gaggTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgt                                                                                                                 <  2:1607424‑M2/97‑6 (MQ=255)                                                                                        gaggTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgt                                                                                                                 >  1:1607424‑M2/1‑92 (MQ=255)                                                                                           gTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtggga                                                                                                             <  2:1350465‑M2/98‑10 (MQ=255)                                                                                           gTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtggga                                                                                                             >  1:1350465‑M2/1‑89 (MQ=255)                                                                                                gggggTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTCCATACATcctgtgggagcgggcatgccc                                                                                                 <  2:809492‑M2/105‑22 (MQ=255)                                                                                                gggggTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTCCATACATcctgtgggagcgggcatgccc                                                                                                 >  1:809492‑M2/1‑84 (MQ=255)                                                                                                 gtggTAGGCGGAAATTTTTGCTGGGTTCTGCGCGGGCAGGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATTCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa                                                   <  1:968990/148‑1 (MQ=255)                                                                                                    gTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgc                                                                                                   <  1:1040172‑M1/99‑49 (MQ=255)                                                                                                    gTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgc                                                                                                   >  2:1040172‑M1/1‑51 (MQ=255)                                                                                                    gTAGGCGGAAATTTCTGCTGGGTTCTTCGCGGGCATGCCCGCTCACACAGGTACATCACAGGTCTGGGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCGTTGCAGATTCCGGGGTTGCCTGGAATGc                                                >  2:433260/1‑150 (MQ=39)                                                                                                        gccgagaTTTGTACTGCGTTTGTCGCGGGCAAGCCCGCTCCCACGGGTACTGCACAGGTCTGCGGGATGCCTACATCCGGTGTGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCt                                            <  1:585416/144‑1 (MQ=255)                                                                                                        gCGGAAATTTTTGCTGGGTTCTTCGCCGGAGTGCCCGCTCCGACAGGTACATAACCGTTCTGTGTGCTGCATACATCCTGTGGGAGCGGGCATGCGCGCGAGGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCt                                            >  1:42560/1‑150 (MQ=255)                                                                                                         cGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcat                                                                                                     <  2:330464‑M2/92‑18 (MQ=255)                                                                                                         cGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcat                                                                                                     >  1:330464‑M2/1‑75 (MQ=255)                                                                                                              ctttttGCTGGGTTCTTCGCGGGCATGCTCGCTCCCACAGGTCAAAAATTGGCTAGGTGTTTTCATACATCCTGTGGGCGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATg                                      <  2:42560/149‑1 (MQ=255)                                                                                                               gttttGAGGGGTTCTTTGCGGGCATGCCCGCTCGCAAAGGTATATCACAGGTCTGTGGATGTCTTACATCCTGTGGGCGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATgg                                     <  1:837735/149‑1 (MQ=255)                                                                                                                  ttgttgGGTTTTGCGCGGGCATGCCCGCTCCCACGGGTCCCGCGCAGGTCTGTGGGCTGCATACATGCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCt                                  <  1:543823/150‑1 (MQ=255)                                                                                                                     cTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCtt                                              >  2:310971/1‑135 (MQ=255)                                                                                                                     cTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCtt                                              <  1:310971/135‑1 (MQ=255)                                                                                                                        ggTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACt                            >  1:96465/1‑150 (MQ=255)                                                                                                                         gTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGTGCATGCCCGCGAAGACGTCGGTGCGGGCTTTGCAGAGTCAGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTc                           >  1:1248631/1‑150 (MQ=255)                                                                                                                           tcttcGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtg                                                                                                                <  2:335697‑M1/63‑36 (MQ=255)                                                                                                                           tcttcGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtg                                                                                                                >  1:335697‑M1/1‑28 (MQ=255)                                                                                                                           tcttcGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGAGAGCGGGCCAGACCGAAAAGAACGCGAGTAAGGCGTTGCAGAGGCCGGGTTTTCATCGAATGTTTGTGGCATGGCCTGCGACGCCg                         >  2:595055/1‑150 (MQ=19)                                                                                                                             ttcGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgcgcatgcccgcgaagaacccagcaaaaatttccgcctacccccccggcctcctggcgcagccccgtctgcaagccactgacga                       >  2:956427‑M1/1‑26 (MQ=255)                                                                                                                             ttcGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGCGGGCTGTCTACATCCCGTGGGAGCGGGCATGTCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGATGCAAGTAATGCGTCTGTCATGGCCTGCGACTCCGCt                       >  1:1519340/1‑150 (MQ=37)                                                                                                                                  gggCATGCCCGCTCCCACAGGatgtatggagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctaccccc                                                               <  2:809492‑M1/105‑85 (MQ=255)                                                                                                                                  gggCATGCCCGCTCCCACAGGatgtatggagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctaccccc                                                               >  1:809492‑M1/1‑21 (MQ=255)                                                                                                                                    gCATGCCCGCTCCCACAGGatgtatgcagccgacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctg                >  2:1011233‑M1/1‑19 (MQ=255)                                                                                                                                    gCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctac                                                                   >  2:1040172‑M2/1‑48 (MQ=255)                                                                                                                                    gCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctac                                                                   <  1:1040172‑M2/99‑52 (MQ=255)                                                                                                                                    gCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCa                     <  2:1047133/145‑1 (MQ=255)                                                                                                                                    gCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCa                     >  1:1047133/1‑145 (MQ=255)                                                                                                                                      aTGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccg                                                                        >  1:330464‑M1/1‑17 (MQ=255)                                                                                                                                      aTGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccg                                                                        <  2:330464‑M1/92‑76 (MQ=255)                                                                                                                                      aTGCCCGCTCCCACAGGTACATCACAGAACCGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgcgc              >  1:41796/1‑150 (MQ=255)                                                                                                                                       ggcCCGCTCCGACAGGatgtatgcagcccacagacctttgatgtactcgtggtggcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctc             <  2:543823‑M1/149‑135 (MQ=255)                                                                                                                                        gCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAgg                   <  1:853732/143‑1 (MQ=255)                                                                                                                                        gCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAgg                   >  2:853732/1‑143 (MQ=255)                                                                                                                                          ccGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgac          >  1:799602‑M1/1‑13 (MQ=255)                                                                                                                                          ccGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgac          >  1:799490‑M1/1‑13 (MQ=255)                                                                                                                                          ccGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgccacctcctggcccaggcccgtctgcaagcaactgacgagcgcctgctcgcc          >  2:595146‑M1/1‑13 (MQ=255)                                                                                                                                          ccGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGAc                                                                                         >  1:616528/1‑71 (MQ=255)                                                                                                                                          ccGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGAc                                                                                         <  2:616528/71‑1 (MQ=255)                                                                                                                                          ccGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTc                                             >  1:370686/1‑115 (MQ=255)                                                                                                                                          ccGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTc                                             <  2:370686/115‑1 (MQ=255)                                                                                                                                           gatctccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaactttccgcctacccccgcgtcctccttagccagtcccgtctgcaagccactgacgagcgcctgctcgact         <  1:1519195‑M1/145‑139 (MQ=255)                                                                                                                                           cGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgact         <  1:581182‑M2/150‑110 (MQ=255)                                                                                                                                              tCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgac                                                          >  1:1350465‑M1/1‑9 (MQ=255)                                                                                                                                              tCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgac                                                          <  2:1350465‑M1/98‑90 (MQ=255)                                                                                                                                              tCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTACATCGACTGCATGTGTGTTTGCCGGCGACTCCGCTCAGGGGCGCGTCGCAgg      >  2:130541/1‑150 (MQ=255)                                                                                                                                               cccACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgactgcct     <  1:1011233‑M1/150‑143 (MQ=255)                                                                                                                                                ccACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgactgcctg    >  1:1584721‑M1/1‑7 (MQ=255)                                                                                                                                                ccACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatctaggtatacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgactgcctg    >  1:848960‑M1/1‑7 (MQ=255)                                                                                                                                                ccACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggct    >  1:1481263/1‑150 (MQ=255)                                                                                                                                                ccACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggct    >  1:1079227/1‑150 (MQ=255)                                                                                                                                                 cacaGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgactgagatc   >  2:1519195‑M1/1‑6 (MQ=255)                                                                                                                                                 cacaGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaaga                                                                                          >  1:335697‑M2/1‑35 (MQ=255)                                                                                                                                                 cacaGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaaga                                                                                          <  2:335697‑M2/63‑29 (MQ=255)                                                                                                                                                  acaGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctc                                                       <  2:1607424‑M1/97‑93 (MQ=255)                                                                                                                                                  acaGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctc                                                       >  1:1607424‑M1/1‑5 (MQ=255)                                                                                                                                                  acaGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTg                                           >  1:126284/1‑109 (MQ=255)                                                                                                                                                  acaGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTg                                           <  2:126284/109‑1 (MQ=255)                                                                                                                                                  acaGGTACATCACAGGGCTGTGGGCTGCATACCTCCTGTGGGCGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctgg  <  2:96465/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                  GGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGG  >  NC_002947/3947835‑3948129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.