New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5346655 =	51 (0.850)	3 (0.050)	3/240	NT	6.1%	coding (29/870 nt)	PP_4703	hypothetical protein
	?	NC_002947	5346704 =	41 (0.680)					coding (78/870 nt)	PP_4703	hypothetical protein

GAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGC  >  NC_002947/5346508‑5346801                                                                                                                                                    |                                                                                                                                                   gAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAAccc                                                                                                                                                  >  2:625041/1‑150 (MQ=255)   aaaCCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCTGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAg                                                                                                                                                <  2:168411/150‑1 (MQ=255)          ggCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGa                                                                                                                                         <  2:1013774/150‑1 (MQ=255)                         cTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAACAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTgg                                                                                                                          >  1:1190784/1‑150 (MQ=255)                          tGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTgg                                                                                                                          >  2:700823/1‑149 (MQ=255)                          tGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTgg                                                                                                                          <  1:700823/149‑1 (MQ=255)                               gACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCg                                                                                                                    >  2:1222666/1‑150 (MQ=255)                               gACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCg                                                                                                                    <  1:625041/150‑1 (MQ=255)                               gACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAAAACAGGAAATGGGCCTCACCGGGCTGGCCCTCg                                                                                                                    <  2:920344/150‑1 (MQ=255)                                aCCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCgg                                                                                                                   >  1:943345/1‑150 (MQ=255)                                  ccGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGccc                                                                                                                       <  1:1409328/144‑1 (MQ=255)                                  ccGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGccc                                                                                                                       >  2:1409328/1‑144 (MQ=255)                                           gTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGAcc                                                                                                        >  2:1111064/1‑150 (MQ=255)                                           gTACAGGGCCTGATCGAAAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGAcc                                                                                                        >  2:145447/1‑150 (MQ=255)                                            tACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGc                                                                                                                         >  1:19525/1‑132 (MQ=255)                                            tACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGc                                                                                                                         <  2:19525/132‑1 (MQ=255)                                                 ggCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAAt                                                                                                  >  2:1508637/1‑150 (MQ=255)                                                     tGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGcc                                                                                              >  2:1406130/1‑150 (MQ=255)                                                      gATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGccc                                                                                             >  1:1542247/1‑150 (MQ=255)                                                        tCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTc                                                                                                                                    >  2:540100/1‑109 (MQ=255)                                                        tCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTc                                                                                                                                    <  1:540100/109‑1 (MQ=255)                                                          atgccaccgaccagcatgctcgggaagtcgccatggacgcgccagctaatactgtgcgggccgaacaggccggggtcgcccttgggcgatCCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAgg                                                                                         >  2:1369506‑M1/91‑150 (MQ=255)                                                             aaaCGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGa                                                                                                                                         <  2:1364288/99‑1 (MQ=255)                                                             aaaCGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGa                                                                                                                                         >  1:1364288/1‑99 (MQ=255)                                                             aaaCGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCg                                                                                      >  1:547735/1‑150 (MQ=255)                                                             aaaCGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGAGCTGGCCGAGGGCCAGcc                                                                                                             <  2:1060450/127‑2 (MQ=255)                                                               aCGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGAc                                                                                    >  2:22636/1‑150 (MQ=255)                                                                   cTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCg                                                                                <  2:547735/150‑1 (MQ=255)                                                                    tCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCTCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGAcccctg                                                                               >  2:1563393/1‑148 (MQ=255)                                                                            tAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCg                                                                       <  1:145447/150‑1 (MQ=255)                                                                                cggcggCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCAt                                                                                                                                           <  2:530803/78‑1 (MQ=255)                                                                                cggcggCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCAt                                                                                                                                           >  1:530803/1‑78 (MQ=255)                                                                                     gcCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGcaca                                                              <  1:1111064/150‑1 (MQ=255)                                                                                      ccGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAg                                                             <  1:22636/150‑1 (MQ=255)                                                                                       cGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGc                                                                              <  2:508120/132‑1 (MQ=255)                                                                                       cGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGc                                                                              >  1:508120/1‑132 (MQ=255)                                                                                        gCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTa                                                           <  1:485293/150‑1 (MQ=255)                                                                                                 gccgccCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAAt                                                                                                  >  1:864804/1‑102 (MQ=255)                                                                                                 gccgccCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAAt                                                                                                  <  2:864804/102‑1 (MQ=255)                                                                                                 gccgccCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGgc                                                  >  1:1589092/1‑150 (MQ=255)                                                                                                    cagctaatactgtgcgggccgaacaggccggggtcgcccttgggcgatCCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGc                                                                                       >  2:1540380‑M1/49‑110 (MQ=255)                                                                                                    cagctaatactgtgcgggccgaacaggccggggtcgcccttgggcgatCCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGc                                                                                       <  1:1540380‑M1/62‑1 (MQ=255)                                                                                                         gTACAGCAGGTCTCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCTGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCAt                                          <  1:1563393/150‑1 (MQ=255)                                                                                                         gTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCAt                                          <  1:1406130/150‑1 (MQ=255)                                                                                                              gcagGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGa                                     <  1:1222666/150‑1 (MQ=255)                                                                                                               cagGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGAc                                    >  2:1362084/1‑150 (MQ=255)                                                                                                                 ggTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGa                                     >  2:658188/1‑147 (MQ=255)                                                                                                                 ggTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGa                                     <  1:658188/147‑1 (MQ=255)                                                                                                                     gCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCAGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCg                              >  2:1190831/1‑150 (MQ=255)                                                                                                                       cATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAg                            >  2:105951/1‑150 (MQ=255)                                                                                                                        aTGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGAcc                                                                                   <  1:747009/94‑1 (MQ=255)                                                                                                                        aTGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGAcc                                                                                   >  2:747009/1‑94 (MQ=255)                                                                                                                          ggAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCg                                                                                                >  2:1098244/1‑79 (MQ=255)                                                                                                                          ggAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCg                                                                                                <  1:1098244/79‑1 (MQ=255)                                                                                                                                        gCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCa           <  1:105951/150‑1 (MQ=255)                                                                                                                                           gTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGTGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCCACCCTTTCGACTTCCCGAGCATGCTGGTCGGTGGCATCa        <  1:387338/150‑1 (MQ=255)                                                                                                                                                gAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCCGGTCGGTGGCATCAgcgcg   >  1:1373009/1‑150 (MQ=255)                                                                                                                                                 aaaCCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAgcgcgc  <  1:1362084/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GAAAACCTGGGCGATACCTCGACCCTGGCCGACCCGAGCGTGGTACAGGGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGC  >  NC_002947/5346508‑5346801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.