New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5346655 =	51 (0.850)	3 (0.050)	3/240	NT	6.1%	coding (29/870 nt)	PP_4703	hypothetical protein
	?	NC_002947	5346704 =	41 (0.680)					coding (78/870 nt)	PP_4703	hypothetical protein

GGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGATGCTGCAGTTGTTGCATCCCCTGGCCCTGGCCGGTGTGTGGGACCACT  >  NC_002947/5346556‑5346852                                                                                                                                                     |                                                                                                                                                     ggCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAAt                                                                                                                                                     >  2:1508637/1‑150 (MQ=255)     tGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGcc                                                                                                                                                 >  2:1406130/1‑150 (MQ=255)      gATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGccc                                                                                                                                                >  1:1542247/1‑150 (MQ=255)          atgccaccgaccagcatgctcgggaagtcgccatggacgcgccagctaatactgtgcgggccgaacaggccggggtcgcccttgggcgatCCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAgg                                                                                                                                            >  2:1369506‑M1/91‑150 (MQ=255)             aaaCGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCg                                                                                                                                         >  1:547735/1‑150 (MQ=255)               aCGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGAc                                                                                                                                       >  2:22636/1‑150 (MQ=255)                   cTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCg                                                                                                                                   <  2:547735/150‑1 (MQ=255)                    tCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCTCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGAcccctg                                                                                                                                  >  2:1563393/1‑148 (MQ=255)                            tAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCg                                                                                                                          <  1:145447/150‑1 (MQ=255)                                     gcCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGcaca                                                                                                                 <  1:1111064/150‑1 (MQ=255)                                      ccGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAg                                                                                                                <  1:22636/150‑1 (MQ=255)                                       cGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGc                                                                                                                                 >  1:508120/1‑132 (MQ=255)                                       cGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGc                                                                                                                                 <  2:508120/132‑1 (MQ=255)                                        gCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTa                                                                                                              <  1:485293/150‑1 (MQ=255)                                                 gccgccCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAAt                                                                                                                                                     >  1:864804/1‑102 (MQ=255)                                                 gccgccCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAAt                                                                                                                                                     <  2:864804/102‑1 (MQ=255)                                                 gccgccCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGgc                                                                                                     >  1:1589092/1‑150 (MQ=255)                                                    cagctaatactgtgcgggccgaacaggccggggtcgcccttgggcgatCCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGc                                                                                                                                          <  1:1540380‑M1/62‑1 (MQ=255)                                                    cagctaatactgtgcgggccgaacaggccggggtcgcccttgggcgatCCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGc                                                                                                                                          >  2:1540380‑M1/49‑110 (MQ=255)                                                         gTACAGCAGGTCTCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCTGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCAt                                                                                             <  1:1563393/150‑1 (MQ=255)                                                         gTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCAt                                                                                             <  1:1406130/150‑1 (MQ=255)                                                              gcagGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGa                                                                                        <  1:1222666/150‑1 (MQ=255)                                                               cagGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGAc                                                                                       >  2:1362084/1‑150 (MQ=255)                                                                 ggTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGa                                                                                        >  2:658188/1‑147 (MQ=255)                                                                 ggTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGa                                                                                        <  1:658188/147‑1 (MQ=255)                                                                     gCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCAGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCg                                                                                 >  2:1190831/1‑150 (MQ=255)                                                                       cATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAg                                                                               >  2:105951/1‑150 (MQ=255)                                                                        aTGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGAcc                                                                                                                                      >  2:747009/1‑94 (MQ=255)                                                                        aTGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGAcc                                                                                                                                      <  1:747009/94‑1 (MQ=255)                                                                          ggAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCg                                                                                                                                                   <  1:1098244/79‑1 (MQ=255)                                                                          ggAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCg                                                                                                                                                   >  2:1098244/1‑79 (MQ=255)                                                                                       gcccttgggcgattccaggtcgagctggccgagggccagcccggtgaggctcatgacctgggATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTg                                                                                                       >  2:1540380‑M2/63‑110 (MQ=255)                                                                                       gcccttgggcgattccaggtcgagctggccgagggccagcccggtgaggctcatgacctgggATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTg                                                                                                       <  1:1540380‑M2/48‑1 (MQ=255)                                                                                        gCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCa                                                              <  1:105951/150‑1 (MQ=255)                                                                                         ccttgggcgattccaggtcgagctggccgagggccagcccggtgaggctcatgacctgggATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCAt                                                             >  2:1369506‑M2/61‑150 (MQ=255)                                                                                           gTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGTGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCCACCCTTTCGACTTCCCGAGCATGCTGGTCGGTGGCATCa                                                           <  1:387338/150‑1 (MQ=255)                                                                                                gAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCCGGTCGGTGGCATCAgcgcg                                                      >  1:1373009/1‑150 (MQ=255)                                                                                                 aaaCCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAgcgcgc                                                     <  1:1362084/150‑1 (MQ=255)                                                                                                     ccAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGAt                                                 >  1:815617/1‑150 (MQ=255)                                                                                                       aGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGc                                                               <  2:1069030/134‑1 (MQ=255)                                                                                                       aGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGc                                                               >  1:1069030/1‑134 (MQ=255)                                                                                                         gTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGAtgctg                                             >  2:540529/1‑150 (MQ=255)                                                                                                         gTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGAtgctg                                             <  2:815617/150‑1 (MQ=255)                                                                                                           cATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGATGCTGCa                                           <  1:540529/150‑1 (MQ=255)                                                                                                              gAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGATGCTGCAgtt                                        >  2:257552/1‑150 (MQ=255)                                                                                                                     aCCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGATGCTGCAGTTGTTGCAt                                 >  1:1619055/1‑150 (MQ=255)                                                                                                                            tGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGATGCTGCAGTTGTTGCATCccctgg                          <  1:257552/150‑1 (MQ=255)                                                                                                                               cccTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCCGGTCGGTGGCATCAGCGCGCTGATGCTGCAGTTGTTGCATCccctggccc                       <  2:1373009/150‑1 (MQ=255)                                                                                                                                ccTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGATGCTGCAGTTGTTGCATCccctggccct                      >  1:1282541/1‑150 (MQ=255)                                                                                                                                ccTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGATGCTGCAGTTGTTGCATCccctggccct                      >  1:1240212/1‑150 (MQ=255)                                                                                                                                          cTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGATGCTGCAGTTGTTGCATCCCCTGGCCCTGGCCGgtgtg            >  2:1390232/1‑150 (MQ=255)                                                                                                                                               ccTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGATGCTGCAGTTGTTGCATCCCCTGGCCCTGGCCGGTGTGTGGGa       <  2:1240212/150‑1 (MQ=255)                                                                                                                                                cTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGATGCTGCAGTTGTTGCATCCCCTGGCCCTGGCCGGTGTGTGGGAc      <  1:1190831/150‑1 (MQ=255)                                                                                                                                                 tGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGATGCTGCAGTTGTTGCATCCCCTGGCCCTGGCCGGTGTGTGGGAcc     >  1:1530132/1‑150 (MQ=255)                                                                                                                                                    aaTCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGATGCTGCAGTTGTTGCATCCCCTGGCCCTGGCCGGTGTGTGGGACCACt  <  2:1190784/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GGCCTGATCGACAAACGCCTCAACCAGTAACCGGCGGCCGCAAATCTGGCCGCCCTGTACAGCAGGTCGCCATGGAAGCCCTTCGTCGCCGTATCGAAACCCAGGTCATGAGCCTCACCGGGCTGGCCCTCGGCCAGCTCGACCTGGAATCGCCCAAGGGCGACCCCGGCCTGTTCGGCCCGCACAGTATTAGCTGGCGCGTCCATGGCGACTTCCCGAGCATGCTGGTCGGTGGCATCAGCGCGCTGATGCTGCAGTTGTTGCATCCCCTGGCCCTGGCCGGTGTGTGGGACCACT  >  NC_002947/5346556‑5346852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.