New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5591042 =	40 (0.670)	5 (0.090)	5/226	NT	11.5%	coding (271/453 nt)	PP_4918	hypothetical protein
	?	NC_002947	5591062 =	39 (0.690)					coding (251/453 nt)	PP_4918	hypothetical protein

AGGCAGTGGCTGAGCCATTCACCCAGGAACAGGTTGAGCTGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGCGC  >  NC_002947/5590894‑5591190                                                                                                                                                     |                                                                                                                                                     aggcAGTGGCTGAGCCATTCACCCAGGAACAGGTTGAGCTGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATac                                                                                                                                                     >  2:1539548/1‑150 (MQ=255)   gcAGTGGCTGAGCCATTCACCCAGGAACAGGTTGAGCTGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATacac                                                                                                                                                   <  2:704610/150‑1 (MQ=255)   gcAGTGGCTGAGCCATTCACCCAGGAACAGGTTGAGCTGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATacac                                                                                                                                                   >  1:704610/1‑150 (MQ=255)   cgcaccacccagagctcgcgccgcatcggcatgacccagggtgaccagatgcttggcgtgctggtgctcgacgtggtgctggcctgcccgtataccaccaccctgcatgtgcgccaggaacacagcctgccgtggttgccagtgccacac                                                                                                                                                   <  2:1252982‑M1/4‑1 (MQ=255)      accacccagagctcgcgccgcatcggcatgacccagggtgaccagatgcttggcgtgctggtgctcgacgtggtgctggcctgcccgtataccaccaccctgcatgtgcgccaggaacacagcctgccgtggttgccagtgccACACCTg                                                                                                                                                <  1:1431575‑M1/7‑1 (MQ=255)      accacccagagctcgcgccgcatcggcatgacccagggtgaccagatgcttggcgtgctggtgctcgacgtggtgctggcctgcccgtataccaccaccctgcatgtgcgccaggaacacagcctgccgtggttgccagtgccACACCTg                                                                                                                                                >  2:1331737‑M1/144‑150 (MQ=255)           ccagagctcgcgccgcatcggcatgacccagggtgaccagatgcttggcgtgctggtgctcgacgtggtgctggcctgcccgtataccaccaccctgcatgtgcgccaggaacacagcctgccgtggttgccagtgccACACCTGCACtt                                                                                                                                           >  1:1252982‑M1/139‑150 (MQ=255)               ccATTCACCCAGGAACAGGTTGAGCTGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATa                                                                                                                                                      <  1:538996/135‑1 (MQ=255)               ccATTCACCCAGGAACAGGTTGAGCTGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATa                                                                                                                                                      >  2:538996/1‑135 (MQ=255)                   tCACCCAGGAACAGGTTGAGCTGGGCCTTTTCGTCCGGCTGGTGCATGGGATCGTTCGGATACGGGTAGATGCTGTGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGgtgt                                                                                                                                   <  1:1437230/150‑1 (MQ=255)                   tCACCCAGGAACAGGTTGAGCTGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGgtgt                                                                                                                                   <  1:1491470/150‑1 (MQ=255)                   cgcgccgcatcggcatgacccagggtgaccagatgcttggcgtgctggtgctcgacgtggtgctggcctgcccgtataccaccaccctgcatgtgcgccaggaacacagcctgccgtggttgccagtgccACACCTGCACTTCCAGgtgt                                                                                                                                   >  2:984618‑M1/131‑150 (MQ=255)                     ccccAGGAACAGGTTGAGCTGGGCCTTTTCGTCCGGGTGGTACATGGCATCCTTCGGATACGGGTAGATGCTGCGCAGGCTCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTgg                                                                                                                                 <  1:489025/149‑1 (MQ=255)                                  ttGAGCTGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATNGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCAc                                                                                                                    <  1:1248505/150‑1 (MQ=255)                                     aGCTGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGc                                                                                                                 >  1:1005444/1‑150 (MQ=255)                                     aGCTGGGCCTGTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTCACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGc                                                                                                                 <  1:480942/150‑1 (MQ=255)                                        tGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAgg                                                                                                              >  2:1136798/1‑150 (MQ=255)                                            ccTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCtgt                                                                                                          <  1:1359677/150‑1 (MQ=255)                                               tttCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGtt                                                                                                       >  2:592407/1‑150 (MQ=255)                                                            gTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATg                                                                                          >  1:627984/1‑150 (MQ=255)                                                            gTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATg                                                                                          <  1:1136798/150‑1 (MQ=255)                                                            gTGCATGGCATCGTTCGGATACGGGCAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCCCTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATg                                                                                          >  1:1628382/1‑150 (MQ=255)                                                              gCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTAGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCa                                                                                        <  2:1005444/150‑1 (MQ=255)                                                                aTGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAgg                                                                                      <  1:307115/150‑1 (MQ=255)                                                                aTGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAgg                                                                                      <  1:1539548/150‑1 (MQ=255)                                                                aTGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAgg                                                                                      <  1:963218/150‑1 (MQ=255)                                                                               tACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGGGATACACCTGCTCTTCCAGCTGTGGCACTGGCAACCACGGCAGGCTGTCTTCCTGGCGCACATGCAGGGTGGTGGTATACggg                                                                       <  2:552740/150‑1 (MQ=255)                                                                                  gggTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACgg                                                                        <  2:20517/146‑1 (MQ=255)                                                                                  gggTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACgg                                                                        >  1:20517/1‑146 (MQ=255)                                                                                    gTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGc                                                                  >  1:1346467/1‑150 (MQ=255)                                                                                       gATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAg                                                               >  1:925539/1‑150 (MQ=255)                                                                                        aTGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGc                                                              >  2:1106470/1‑150 (MQ=255)                                                                                         tgctgcGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGTACACGCAGGGGGCTGGTATCCGGGCAGGccgaca                                                             >  2:353579/1‑146 (MQ=255)                                                                                          gctgcGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGcac                                                            <  1:826293/150‑1 (MQ=255)                                                                                                cAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTc                                                      <  1:353579/150‑1 (MQ=255)                                                                                                cAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTc                                                      <  2:627984/150‑1 (MQ=255)                                                                                                cAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTc                                                      <  2:1346467/150‑1 (MQ=255)                                                                                                         ggTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAg                                             <  2:1281491/150‑1 (MQ=255)                                                                                                            gtgtTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAAACACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCAc                                          <  2:1513394/150‑1 (MQ=255)                                                                                                               ttCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTg                                                                                                   <  2:782429/90‑1 (MQ=255)                                                                                                               ttCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTg                                                                                                   >  1:782429/1‑90 (MQ=255)                                                                                                               gtgcgccaggaacacaacctgccgtggttgccagtgccACACCTGCACTTCCAGGTGTGGCACt                                                                                                                             <  2:915843‑M1/26‑1 (MQ=255)                                                                                                               gtgcgccaggaacacaacctgccgtggttgccagtgccACACCTGCACTTCCAGGTGTGGCACt                                                                                                                             >  1:915843‑M1/39‑64 (MQ=255)                                                                                                                           cACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTc                           >  2:685284/1‑150 (MQ=255)                                                                                                                              ttCGGCCATGCGCGCATCGTGCTACAGCTGCAATTACAGGGGTGGCACTGGCACCAACGGCAGGCTGAGGTCCTGGCGGACGTACAGGGGGCTGGTAAACGGGCAGCACAGCACCACGTGGGGTACCAGCACGCCAAGCAGGTGGTCatc                        >  2:129885/1‑148 (MQ=255)                                                                                                                              ttCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGggtggtg                                                                                <  2:1581630/94‑1 (MQ=255)                                                                                                                              ttCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGggtggtg                                                                                >  1:1581630/1‑94 (MQ=255)                                                                                                                                  gCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTgg                    >  2:1380260/1‑150 (MQ=255)                                                                                                                                     aTGCGCGCATCGTGATAGACATGCAATTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTc                 >  2:837714/1‑150 (MQ=255)                                                                                                                                         gcgcATCGTTATACACCTGGACTTCCAGGTGTTGCCCTGGCAACCACGGCAGGCTGTGTTCCTGGGCCACATGCAGGGTGGTGGTTTACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGc             <  2:1628382/150‑1 (MQ=255)                                                                                                                                          ttgccagtgccACACCTGGAAGTGCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGggtgg                                                                                  <  2:1402076‑M1/69‑1 (MQ=255)                                                                                                                                          ttgccagtgccACACCTGGAAGTGCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGggtgg                                                                                  >  1:1402076‑M1/12‑80 (MQ=255)                                                                                                                                             aTCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGcacca                                                          >  1:189468/1‑101 (MQ=255)                                                                                                                                             aTCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGcacca                                                          <  2:189468/101‑1 (MQ=255)                                                                                                                                                 tGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATgcgg     >  2:276991/1‑150 (MQ=255)                                                                                                                                                    tACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGgcgc  <  1:276991/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AGGCAGTGGCTGAGCCATTCACCCAGGAACAGGTTGAGCTGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGCGC  >  NC_002947/5590894‑5591190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.