New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5591042 =	40 (0.670)	5 (0.090)	5/226	NT	11.5%	coding (271/453 nt)	PP_4918	hypothetical protein
	?	NC_002947	5591062 =	39 (0.690)					coding (251/453 nt)	PP_4918	hypothetical protein

ACCCAGGAACAGGTTGAGCTGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGCGCGAGCTCTGGGTGGTGCG  >  NC_002947/5590914‑5591207                                                                                                                                                     |                                                                                                                                                  ccccAGGAACAGGTTGAGCTGGGCCTTTTCGTCCGGGTGGTACATGGCATCCTTCGGATACGGGTAGATGCTGCGCAGGCTCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTgg                                                                                                                                                  <  1:489025/149‑1 (MQ=255)              ttGAGCTGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATNGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCAc                                                                                                                                     <  1:1248505/150‑1 (MQ=255)                 aGCTGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGc                                                                                                                                  >  1:1005444/1‑150 (MQ=255)                 aGCTGGGCCTGTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTCACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGc                                                                                                                                  <  1:480942/150‑1 (MQ=255)                    tGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAgg                                                                                                                               >  2:1136798/1‑150 (MQ=255)                        ccTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCtgt                                                                                                                           <  1:1359677/150‑1 (MQ=255)                           tttCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGtt                                                                                                                        >  2:592407/1‑150 (MQ=255)                                        gTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATg                                                                                                           <  1:1136798/150‑1 (MQ=255)                                        gTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATg                                                                                                           >  1:627984/1‑150 (MQ=255)                                        gTGCATGGCATCGTTCGGATACGGGCAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCCCTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATg                                                                                                           >  1:1628382/1‑150 (MQ=255)                                          gCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTAGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCa                                                                                                         <  2:1005444/150‑1 (MQ=255)                                            aTGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAgg                                                                                                       <  1:963218/150‑1 (MQ=255)                                            aTGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAgg                                                                                                       <  1:307115/150‑1 (MQ=255)                                            aTGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAgg                                                                                                       <  1:1539548/150‑1 (MQ=255)                                                           tACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGGGATACACCTGCTCTTCCAGCTGTGGCACTGGCAACCACGGCAGGCTGTCTTCCTGGCGCACATGCAGGGTGGTGGTATACggg                                                                                        <  2:552740/150‑1 (MQ=255)                                                              gggTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACgg                                                                                         >  1:20517/1‑146 (MQ=255)                                                              gggTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACgg                                                                                         <  2:20517/146‑1 (MQ=255)                                                                gTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGc                                                                                   >  1:1346467/1‑150 (MQ=255)                                                                   gATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAg                                                                                >  1:925539/1‑150 (MQ=255)                                                                    aTGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGc                                                                               >  2:1106470/1‑150 (MQ=255)                                                                     tgctgcGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGTACACGCAGGGGGCTGGTATCCGGGCAGGccgaca                                                                              >  2:353579/1‑146 (MQ=255)                                                                      gctgcGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGcac                                                                             <  1:826293/150‑1 (MQ=255)                                                                            cAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTc                                                                       <  2:627984/150‑1 (MQ=255)                                                                            cAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTc                                                                       <  2:1346467/150‑1 (MQ=255)                                                                            cAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTc                                                                       <  1:353579/150‑1 (MQ=255)                                                                                ccaccctgcatgtgcgccaggaacacagcctgccgtggttgccagtgccacacctgcacttccaggtgtGGCACTGGCaa                                                                                                                                         <  2:1402076‑M2/11‑1 (MQ=255)                                                                                ccaccctgcatgtgcgccaggaacacagcctgccgtggttgccagtgccacacctgcacttccaggtgtGGCACTGGCaa                                                                                                                                         >  1:1402076‑M2/70‑80 (MQ=255)                                                                                     ggTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAg                                                              <  2:1281491/150‑1 (MQ=255)                                                                                        gtgtTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAAACACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCAc                                                           <  2:1513394/150‑1 (MQ=255)                                                                                           ttCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTg                                                                                                                    >  1:782429/1‑90 (MQ=255)                                                                                           ttCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTg                                                                                                                    <  2:782429/90‑1 (MQ=255)                                                                                           gtgcgccaggaacacaacctgccgtggttgccagtgccACACCTGCACTTCCAGGTGTGGCACt                                                                                                                                              <  2:915843‑M1/26‑1 (MQ=255)                                                                                           gtgcgccaggaacacaacctgccgtggttgccagtgccACACCTGCACTTCCAGGTGTGGCACt                                                                                                                                              >  1:915843‑M1/39‑64 (MQ=255)                                                                                                       cACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTc                                            >  2:685284/1‑150 (MQ=255)                                                                                                          ttCGGCCATGCGCGCATCGTGCTACAGCTGCAATTACAGGGGTGGCACTGGCACCAACGGCAGGCTGAGGTCCTGGCGGACGTACAGGGGGCTGGTAAACGGGCAGCACAGCACCACGTGGGGTACCAGCACGCCAAGCAGGTGGTCatc                                         >  2:129885/1‑148 (MQ=255)                                                                                                          ttCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGggtggtg                                                                                                 <  2:1581630/94‑1 (MQ=255)                                                                                                          ttCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGggtggtg                                                                                                 >  1:1581630/1‑94 (MQ=255)                                                                                                              gCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTgg                                     >  2:1380260/1‑150 (MQ=255)                                                                                                                 aTGCGCGCATCGTGATAGACATGCAATTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTc                                  >  2:837714/1‑150 (MQ=255)                                                                                                                     gcgcATCGTTATACACCTGGACTTCCAGGTGTTGCCCTGGCAACCACGGCAGGCTGTGTTCCTGGGCCACATGCAGGGTGGTGGTTTACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGc                              <  2:1628382/150‑1 (MQ=255)                                                                                                                      ttgccagtgccACACCTGGAAGTGCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGggtgg                                                                                                   >  1:1402076‑M1/12‑80 (MQ=255)                                                                                                                      ttgccagtgccACACCTGGAAGTGCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGggtgg                                                                                                   <  2:1402076‑M1/69‑1 (MQ=255)                                                                                                                         aTCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGcacca                                                                           <  2:189468/101‑1 (MQ=255)                                                                                                                         aTCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGcacca                                                                           >  1:189468/1‑101 (MQ=255)                                                                                                                           agtgccacacctggaagtgcaggtgtGGCACTGGCAACCACGGCAGGTTGTGTTCCTGGCGcac                                                                                                              <  2:915843‑M2/38‑1 (MQ=255)                                                                                                                           agtgccacacctggaagtgcaggtgtGGCACTGGCAACCACGGCAGGTTGTGTTCCTGGCGcac                                                                                                              >  1:915843‑M2/27‑64 (MQ=255)                                                                                                                             tGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATgcgg                      >  2:276991/1‑150 (MQ=255)                                                                                                                                tACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGgcgc                   <  1:276991/150‑1 (MQ=255)                                                                                                                                 acacctggaagtgcaggtgtGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGcgcg                  >  2:984618‑M2/21‑150 (MQ=255)                                                                                                                                  CACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGgc                                                                                                                  >  1:490208‑M1/1‑53 (MQ=255)                                                                                                                                  CACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGgc                                                                                                                  <  2:490208‑M1/53‑1 (MQ=255)                                                                                                                                   ACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGCGCGAg                <  1:1629780‑M1/150‑1 (MQ=255)                                                                                                                                     CTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGCGCGAGct              <  1:743685‑M1/150‑1 (MQ=255)                                                                                                                                     CTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGCGCGAGct              <  2:1518506‑M1/150‑1 (MQ=255)                                                                                                                                      tggaCTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGCGCGAGctc             >  1:1643123/4‑150 (MQ=255)                                                                                                                                      TGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGCGCGAGctc             <  2:1431575‑M1/150‑1 (MQ=255)                                                                                                                                       GCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGggtggtg                                                                                                 >  2:731590‑M1/1‑65 (MQ=255)                                                                                                                                       GCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGggtggtg                                                                                                 <  1:731590‑M1/65‑1 (MQ=255)                                                                                                                                         aagtgcaggtgtGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGCGCGAGCTCTgg          >  1:1252982‑M2/13‑150 (MQ=255)                                                                                                                                             ccAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGCGCGAGCTCTGggtcg      <  1:1380260/150‑3 (MQ=255)                                                                                                                                              caggtgtGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGCGCGAGCTCTGggtggt     >  2:1331737‑M2/8‑150 (MQ=255)                                                                                                                                              caggtgtGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGCGCGAGCTCTGggtggt     <  1:1431575‑M2/143‑1 (MQ=255)                                                                                                                                                 gtgtGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGCGCGAGCTCTGGGTGGTgcg  <  2:1252982‑M2/146‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  ACCCAGGAACAGGTTGAGCTGGGCCTTTTCGTCCGGCTGGTGCATGGCATCGTTCGGATACGGGTAGATGCTGCGCAGGCGCCGGGTGTGTTCGGCGCTGACCACTTCGGCCATGCGCGCATCGTGATACACCTGCACTTCCAGGTGTGGCACTGGCAACCACGGCAGGCTGTGTTCCTGGCGCACATGCAGGGTGGTGGTATACGGGCAGGCCAGCACCACGTCGAGCACCAGCACGCCAAGCATCTGGTCACCCTGGGTCATGCCGATGCGGCGCGAGCTCTGGGTGGTGCG  >  NC_002947/5590914‑5591207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.