New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5595982	58 (0.970)	3 (0.050)	3/230	NT	5.2%	coding (148/1881 nt)	thiC	phosphomethylpyrimidine synthase
	?	NC_002947	= 5596006	54 (0.940)					coding (124/1881 nt)	thiC	phosphomethylpyrimidine synthase

CACCGCGGGCTTCGATCCACGCCGAACGCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTG  >  NC_002947/5595838‑5596124                                                                                                                                                 |                                                                                                                                               ccccGCGGGCTGCTATCCACGCCGAACGCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCa                                                                                                                                           <  2:116282/148‑1 (MQ=255)  aCCGCGGGCTTCGATCCACGCCGAACGCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAAACGGTCGTGGTGTCATCCAg                                                                                                                                          <  2:67654/150‑1 (MQ=255)    cgcgGGCTTCGATCCACGCCGAACGCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGTGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGc                                                                                                                                        <  2:1191574/150‑1 (MQ=255)    cgcgGGCTTCGATCCACGCCGAACGCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGc                                                                                                                                        >  1:665601/1‑150 (MQ=255)         gCTTCGATCCACGCCGAACGCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGAtt                                                                                                                                   <  2:887288/150‑1 (MQ=255)           ttCGATCCACGCCGAACGCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTc                                                                                                                                 >  1:592136/1‑150 (MQ=255)            tCGATCCACGCCGAACGCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCa                                                                                                                                <  2:665601/150‑1 (MQ=255)                   aCGCCGAACGCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATgg                                                                                                                         <  1:1440260/150‑1 (MQ=255)                     gCCGAACGCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGAtt                                                                                                                                   >  2:977745/1‑138 (MQ=255)                     gCCGAACGCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGAtt                                                                                                                                   <  1:977745/138‑1 (MQ=255)                            gCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCcccatgcgtgaaatcagcctggatgacacccc                                                                                                                <  2:1022420‑M1/150‑33 (MQ=255)                            gCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACg                                                                                                                              >  2:1474583/1‑136 (MQ=255)                            gCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACg                                                                                                                              <  1:1474583/136‑1 (MQ=255)                                   gggCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTCCAGCCGCGTTGTGGCAAACATCGTCGCCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCgg                                                                                                         <  1:192310/150‑1 (MQ=255)                                       aGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGgcgc                                                                                                     >  2:872205/1‑150 (MQ=255)                                        ggCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGcgcg                                                                                                    >  2:1272742/1‑150 (MQ=255)                                         gCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGa                                                                                                   >  1:1610785/1‑150 (MQ=255)                                         gCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGa                                                                                                   >  2:785102/1‑150 (MQ=255)                                          ccTTTGCGCACATCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAg                                                                                                  <  1:1376542/150‑1 (MQ=255)                                           cTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGc                                                                                                 >  2:1590729/1‑150 (MQ=255)                                                 gcACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGa                                                                                           <  2:1610785/150‑1 (MQ=255)                                                 gcACGGCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGa                                                                                           <  1:573332/150‑1 (MQ=255)                                                         atgatCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCCGAGCGAGTGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACAcc                                                                                   >  1:1276104/1‑150 (MQ=255)                                                         atgatCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCAc                                                                                                                               <  1:774270/106‑1 (MQ=255)                                                         atgatCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCAc                                                                                                                               >  2:774270/1‑106 (MQ=255)                                                             tCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACg                                                                                                                  >  2:871443/1‑115 (MQ=255)                                                             tCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACg                                                                                                                  <  1:871443/115‑1 (MQ=255)                                                               aCGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAgg                                                                                                                                         >  2:973230/1‑90 (MQ=255)                                                               aCGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAgg                                                                                                                                         <  1:973230/90‑1 (MQ=255)                                                               aCGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTgcgc                                                                             <  1:673459/150‑1 (MQ=255)                                                                  tCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGaa                                                                          <  1:940151/150‑1 (MQ=255)                                                                      ggTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAAcgcg                                                                      <  1:1272742/150‑1 (MQ=255)                                                                       gTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAATGCgg                                                                     <  1:872205/150‑1 (MQ=255)                                                                          ggTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGaa                                                                  <  1:936982/150‑1 (MQ=255)                                                                             gtACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATgg                                                                                                                         <  2:509506/92‑1 (MQ=255)                                                                             gtACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATgg                                                                                                                         >  1:509506/1‑92 (MQ=255)                                                                              tACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATAGGTTGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGt                                                              <  1:1252615/150‑1 (MQ=255)                                                                                   gCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCcccatgcgtgaaatcagcctggatgacac                                                                                                                   <  1:454990‑M1/92‑30 (MQ=255)                                                                                   gCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCAc                                                         >  1:573148/1‑150 (MQ=255)                                                                                   gCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCACCGCCGAAATCGGTCGGGGTGTCcccatgcgtgaaatcagcctggatgacac                                                                                                                   >  2:454990‑M1/1‑63 (MQ=255)                                                                                     cAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACgg                                                               <  1:840769/142‑1 (MQ=255)                                                                                     cAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACgg                                                               >  2:840769/1‑142 (MQ=255)                                                                                      aGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGACCGCGGGAACGGTTGccccgg                                                      >  2:997793/1‑145 (MQ=255)                                                                                           tgtCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGActgct                                                 <  1:785102/150‑1 (MQ=255)                                                                                             tCATACACCAACACCGGGGCGTTGGACTCGAGGCCGAAATCGCTCGGGGTGTCATCCCGCCGGATTTCACGCATGGGGACACGGATGTCCGGGCGAGAGCCTTCGACATACACCTTGCGCGAACGCGGGTACAGTTGCACGGActtctgc                                               >  2:232100/1‑149 (MQ=255)                                                                                               aTACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCAc                                                         >  1:1038134/1‑138 (MQ=255)                                                                                               aTACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCAc                                                         <  2:1038134/138‑1 (MQ=255)                                                                                               aTACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATc                                             >  1:148334/1‑150 (MQ=255)                                                                                                tACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCg                                            >  1:1371936/1‑150 (MQ=255)                                                                                                   acCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACt                                         >  2:440293/1‑150 (MQ=255)                                                                                                      aGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTtgt                                      <  1:778346/150‑1 (MQ=255)                                                                                                       gCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGActgctg                                                >  2:1297378/1‑139 (MQ=255)                                                                                                       gCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGActgctg                                                <  1:1297378/139‑1 (MQ=255)                                                                                                                  ttGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGga                                                                                                                      >  2:319919‑M2/1‑56 (MQ=255)                                                                                                                  ttGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGga                                                                                                                      <  1:319919‑M2/58‑3 (MQ=255)                                                                                                                       cTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGtt                     <  2:232857/150‑1 (MQ=255)                                                                                                                        tCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTg                    >  1:772117/1‑150 (MQ=255)                                                                                                                          gccgccGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGAt                  <  2:573148/150‑1 (MQ=255)                                                                                                                          gccgccGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGAt                  <  1:440293/150‑1 (MQ=255)                                                                                                                              ccgAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCt              <  2:1371936/150‑1 (MQ=255)                                                                                                                                gAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCACGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACGTGCGGCGATTCGCCGAGGTTGATCGCttt            >  1:1235754/1‑150 (MQ=255)                                                                                                                                  acgcggtcggGGTGCCATCCAGGCTGATTTCACGCATTTGGACACGGATGTCCGGGCGCGACCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGATGATCGACTTGTGCCCATTCGCTGAGTTTGACCGCttttt          <  2:1235754/147‑1 (MQ=255)                                                                                                                                        tcggGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGtt    <  2:592136/150‑1 (MQ=255)                                                                                                                                          ggggTGTCATCCAGGCTGATTTCACGCATGGGgacaccccgaccgatttcggcggcgagtccaacgccccggtgctggtgtatgacacgtctggcccgtacaccgaccccgacgtgatcatcgacgtgcgcaaaggcctgcccgatgtgc  <  2:1022420‑M2/150‑119 (MQ=255)                                                                                                                                          ggggTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTg  <  2:148334/150‑1 (MQ=255)                                                                                                                                             gtgtCATCCAGGCTGATTTCACGCATGGGgacaccccgaccgatttcggcggtgagtccaacgccccggtgctggtgtatgacacgtctggc                                                         >  2:454990‑M2/1‑29 (MQ=255)                                                                                                                                             gtgtCATCCAGGCTGATTTCACGCATGGGgacaccccgaccgatttcggcggcgagtccaacgccccggtgctggtgtatgacacgtctggc                                                         <  1:454990‑M2/92‑64 (MQ=255)                                                                                                                                                tCcccatgcgtgaaatcagcctggatgacaccccgaccgatttcggcggcgagtccaa                                                                                        >  2:319919‑M1/1‑2 (MQ=255)                                                                                                                                                tCcccatgcgtgaaatcagcctggatgacaccccgaccgatttcggcggcgagtccaa                                                                                        <  1:319919‑M1/58‑57 (MQ=255)                                                                                                                                                 |                                                                                                                                               CACCGCGGGCTTCGATCCACGCCGAACGCACATCGGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTG  >  NC_002947/5595838‑5596124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.