New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5595982 | 58 (0.970) | 3 (0.050) | 3/230 | NT | 5.2% | coding (148/1881 nt) | thiC | phosphomethylpyrimidine synthase |
? | NC_002947 | = 5596006 | 54 (0.940) | coding (124/1881 nt) | thiC | phosphomethylpyrimidine synthase |
GGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTGGTCATCACAGGCTC > NC_002947/5595872‑5596138 | gggCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTCCAGCCGCGTTGTGGCAAACATCGTCGCCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCgg < 1:192310/150‑1 (MQ=255) aGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGgcgc > 2:872205/1‑150 (MQ=255) ggCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGcgcg > 2:1272742/1‑150 (MQ=255) gCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGa > 1:1610785/1‑150 (MQ=255) gCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGa > 2:785102/1‑150 (MQ=255) ccTTTGCGCACATCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAg < 1:1376542/150‑1 (MQ=255) cTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGc > 2:1590729/1‑150 (MQ=255) gcACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGa < 2:1610785/150‑1 (MQ=255) gcACGGCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGa < 1:573332/150‑1 (MQ=255) atgatCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCCGAGCGAGTGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACAcc > 1:1276104/1‑150 (MQ=255) tCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACg > 2:871443/1‑115 (MQ=255) tCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACg < 1:871443/115‑1 (MQ=255) aCGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTgcgc < 1:673459/150‑1 (MQ=255) tCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGaa < 1:940151/150‑1 (MQ=255) ggTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAAcgcg < 1:1272742/150‑1 (MQ=255) gTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAATGCgg < 1:872205/150‑1 (MQ=255) ggTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGaa < 1:936982/150‑1 (MQ=255) tACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATAGGTTGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGt < 1:1252615/150‑1 (MQ=255) gCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCAc > 1:573148/1‑150 (MQ=255) cAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACgg > 2:840769/1‑142 (MQ=255) cAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACgg < 1:840769/142‑1 (MQ=255) aGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGACCGCGGGAACGGTTGccccgg > 2:997793/1‑145 (MQ=255) tgtCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGActgct < 1:785102/150‑1 (MQ=255) tCATACACCAACACCGGGGCGTTGGACTCGAGGCCGAAATCGCTCGGGGTGTCATCCCGCCGGATTTCACGCATGGGGACACGGATGTCCGGGCGAGAGCCTTCGACATACACCTTGCGCGAACGCGGGTACAGTTGCACGGActtctgc > 2:232100/1‑149 (MQ=255) aTACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCAc > 1:1038134/1‑138 (MQ=255) aTACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCAc < 2:1038134/138‑1 (MQ=255) aTACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATc > 1:148334/1‑150 (MQ=255) tACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCg > 1:1371936/1‑150 (MQ=255) acCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACt > 2:440293/1‑150 (MQ=255) aGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTtgt < 1:778346/150‑1 (MQ=255) gCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGActgctg < 1:1297378/139‑1 (MQ=255) gCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGActgctg > 2:1297378/1‑139 (MQ=255) ttGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGga < 1:319919‑M2/58‑3 (MQ=255) ttGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGga > 2:319919‑M2/1‑56 (MQ=255) cTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGtt < 2:232857/150‑1 (MQ=255) tCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTg > 1:772117/1‑150 (MQ=255) gccgccGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGAt < 2:573148/150‑1 (MQ=255) gccgccGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGAt < 1:440293/150‑1 (MQ=255) ccgAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCt < 2:1371936/150‑1 (MQ=255) gAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCACGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACGTGCGGCGATTCGCCGAGGTTGATCGCttt > 1:1235754/1‑150 (MQ=255) acgcggtcggGGTGCCATCCAGGCTGATTTCACGCATTTGGACACGGATGTCCGGGCGCGACCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGATGATCGACTTGTGCCCATTCGCTGAGTTTGACCGCttttt < 2:1235754/147‑1 (MQ=255) tcggGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGtt < 2:592136/150‑1 (MQ=255) ggggTGTCATCCAGGCTGATTTCACGCATGGGgacaccccgaccgatttcggcggcgagtccaacgccccggtgctggtgtatgacacgtctggcccgtacaccgaccccgacgtgatcatcgacgtgcgcaaaggcctgcccgatgtgc < 2:1022420‑M2/150‑119 (MQ=255) ggggTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTg < 2:148334/150‑1 (MQ=255) gtgtCATCCAGGCTGATTTCACGCATGGGgacaccccgaccgatttcggcggtgagtccaacgccccggtgctggtgtatgacacgtctggc > 2:454990‑M2/1‑29 (MQ=255) gtgtCATCCAGGCTGATTTCACGCATGGGgacaccccgaccgatttcggcggcgagtccaacgccccggtgctggtgtatgacacgtctggc < 1:454990‑M2/92‑64 (MQ=255) aTCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACtt > 1:355641/1‑104 (MQ=255) aTCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACtt < 2:355641/104‑1 (MQ=255) aTCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTtgtg > 1:352897/1‑107 (MQ=255) aTCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTtgtg < 2:352897/107‑1 (MQ=255) aTCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGa > 1:658620/1‑119 (MQ=255) aTCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGa < 2:658620/119‑1 (MQ=255) tCCAGGCTTATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTGGTCATcaca > 2:1400106/1‑150 (MQ=255) tCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGa < 2:456903/44‑1 (MQ=255) tCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGa > 1:456903/1‑44 (MQ=255) ccAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCtt < 2:188640/135‑1 (MQ=255) ccAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCtt > 1:188640/1‑135 (MQ=255) cAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTGGTCATCACAgg < 2:1066526/150‑1 (MQ=255) ggCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTg < 2:1570655/137‑1 (MQ=255) ggCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTg > 1:1570655/1‑137 (MQ=255) gCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAAAGCGGGACCGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTGGTCATCACAGGctc > 1:652550/1‑150 (MQ=255) | GGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTGGTCATCACAGGCTC > NC_002947/5595872‑5596138 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |