New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5690116	54 (0.900)	4 (0.070)	4/228	NT	7.9%	coding (283/402 nt)	pilG	pilus biosynthesis/twitching motility protein PilG
	?	NC_002947	= 5690136	42 (0.740)					coding (263/402 nt)	pilG	pilus biosynthesis/twitching motility protein PilG

AAGTAGGACCGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTC  >  NC_002947/5689968‑5690263                                                                                                                                                      |                                                                                                                                                      aaGTAGGACCGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCg‑‑g                                                                                                                                                    <  2:1120081/150‑1 (MQ=255) aaGTAGGACCGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCg‑‑g                                                                                                                                                    <  2:1267427/150‑1 (MQ=255) aaGTAGGACCGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCg‑‑g                                                                                                                                                    <  2:934124/150‑1 (MQ=255)      ggACCGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCtt                                                                                                                                               >  2:820479/1‑150 (MQ=255)       gACCGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTg                                                                                                                                              >  1:981358/1‑150 (MQ=255)       gACCGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTg                                                                                                                                              >  1:623794/1‑150 (MQ=255)       gACCGCGCCATGGCGGGGCTCGGTCAGGGTGCGCTATGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTg                                                                                                                                              >  1:387152/1‑150 (MQ=255)        aCCGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGt                                                                                                                                             <  1:45678/150‑1 (MQ=255)         ccGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTc                                                                                                                                            <  1:1253646/150‑1 (MQ=255)         ccGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTc                                                                                                                                            <  2:582484/150‑1 (MQ=255)         ccGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTc                                                                                                                                            <  1:1558957/150‑1 (MQ=255)         ccGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGAGCGCGGATCGCGTCGAGCACTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTc                                                                                                                                            >  1:111008/1‑150 (MQ=255)            cgcCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGaa                                                                                                                                         <  2:981358/150‑1 (MQ=255)                         cTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATcgcgg                                                                                                                            >  1:1225986‑M2/1‑145 (MQ=255)                           cGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGAGTAGCACGAAAGTCGCGGGCTTAACGGCTTGGTCAGGAACTAACCGG‑CCCTATGCCAGGCCCCGCG‑‑TGCCTTGTCGAACAGGCCATCGCGGga                                                                                                                          <  1:1192274/150‑1 (MQ=255)                               cAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCGatggcctgttcgacaaggcccgcgggcgggt                                                                                                                        <  1:271371‑M1/150‑32 (MQ=255)                                aGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCGatggcctgttcgacaaggcccgcgggcggg                                                                                                                         >  1:406560‑M1/1‑118 (MQ=255)                                aGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCGatggcctgttcgacaaggcccgcgggcggg                                                                                                                         <  2:406560‑M1/148‑31 (MQ=255)                                   gTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGAcagca                                                                                                                  <  2:387152/150‑1 (MQ=255)                                      cGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGa                                                                                                               <  2:623794/150‑1 (MQ=255)                                       gtgtTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCGATGGCCTGTTCGACAAGGCC‑gcgggcgggtggtcggtt                                                                                                                >  2:1527792‑M2/1‑132 (MQ=255)                                       gtgtTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTc                                                                                                                                            <  2:687713/120‑1 (MQ=255)                                       gtgtTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTc                                                                                                                                            >  1:687713/1‑120 (MQ=255)                                         ccgatctaGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCAATTTTTAACAGGCCATCGCGGGACGACAGCAGGATaa                                                                                                            <  1:1135335/143‑1 (MQ=255)                                              tgAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGACCGGGATTTTCAGGAACAGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCCAACAGGCCATCGCGGGACGACAGCAGGATAACCggg                                                                                                       <  1:115614/150‑1 (MQ=255)                                              tgAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCggg                                                                                                       <  2:1216955/150‑1 (MQ=255)                                              tgAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCggg                                                                                                       <  1:852962/150‑1 (MQ=255)                                              tgAGGGGCGGCAAACCCCGGCACATGGGCGCGGATCGCGCCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCggg                                                                                                       <  1:1502397/150‑1 (MQ=255)                                                 ggTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTAAAGAACTGAGCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAAcagatcgg                                                                                                    >  2:1135335/1‑143 (MQ=255)                                                   tGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGACCCGACCACCCG‑CCCGCG‑‑GGCCTTTTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTc                                                                                                  <  2:186205/150‑1 (MQ=255)                                                    gCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACa                                                                                                                                       >  2:856119/1‑112 (MQ=255)                                                    gCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACa                                                                                                                                       <  1:856119/112‑1 (MQ=255)                                                           aCCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGGGTCCTTGAAgg                                                                                          >  1:278740/1‑150 (MQ=255)                                                             ccGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCa                                                                                        >  1:1506040/1‑150 (MQ=255)                                                               gggCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACt                                                                                      >  2:1054430/1‑150 (MQ=255)                                                                        ggCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCtt                                                                             <  2:1506040/150‑1 (MQ=255)                                                                           gcgGGTCGCGTCGAGCAGTTCTTCCTTGCTGAACGAAGTAGCCAGGAACTGATGGGACCCGACACCCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCACGGCACGACAGCAGGATAACCGGAGTGTCCTTGAAGGCACTGTTGTGCTTAAt                                                                          >  2:521411/1‑150 (MQ=255)                                                                              gATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAgg                                                                                                                                     >  2:1511694/1‑88 (MQ=255)                                                                              gATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAgg                                                                                                                                     <  1:1511694/88‑1 (MQ=255)                                                                                           aGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGgacga                                                                                                                       <  2:246631/89‑1 (MQ=255)                                                                                           aGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGgacga                                                                                                                       >  1:246631/1‑89 (MQ=255)                                                                                              tcttcCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAg                                                       <  1:964490/150‑1 (MQ=255)                                                                                                ttcCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGGCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGcc                                                     >  2:1422122/1‑150 (MQ=255)                                                                                                 tcCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCg                                                    >  1:990567/1‑150 (MQ=255)                                                                                                  ccTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAgg                                                                                          <  1:265149/111‑1 (MQ=255)                                                                                                  ccTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAgg                                                                                          >  2:265149/1‑111 (MQ=255)                                                                                                   cTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACGCG‑CCNGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGGTTACCGCGCAGGGCTGGGAGCCGTc                                                  >  1:536118/1‑150 (MQ=255)                                                                                                   cTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTc                                                  >  1:818732/1‑150 (MQ=255)                                                                                                      gCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAg                                               <  2:381673/150‑1 (MQ=255)                                                                                                          aaCGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGt                                           >  1:912421/1‑150 (MQ=255)                                                                                                                  ggTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑CGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAg                                   <  1:1162992/150‑1 (MQ=255)                                                                                                                      aggcccTGATGGGAACCTACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGcaca                               <  2:912421/145‑1 (MQ=255)                                                                                                                      aGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGAcag                                                                                                                    <  1:1087772/65‑1 (MQ=255)                                                                                                                      aGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGAcag                                                                                                                    >  2:1087772/1‑65 (MQ=255)                                                                                                                           cTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATcgac                          <  1:1054430/150‑1 (MQ=255)                                                                                                                           cTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATAGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATcgac                          <  2:278740/150‑1 (MQ=255)                                                                                                                                   aaCCGACCACCCG‑CCCGCGggccttgtcgaacaggccatcgcgggcgggtggtcggttccgatcagttcctgaccaagccgttcagcaaggaagaactgctcgacgcgatccgcgcccatgtgcccgggtttgccgcacctcaacaacac                    >  2:1527792‑M1/1‑19 (MQ=255)                                                                                                                                       gACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACt              >  1:508470/1‑150 (MQ=255)                                                                                                                                        accaccCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATcgacga                        <  1:1302074/139‑1 (MQ=255)                                                                                                                                        accaccCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATcgacga                        >  2:1302074/1‑139 (MQ=255)                                                                                                                                          caccCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGc                                  <  1:908061/127‑1 (MQ=255)                                                                                                                                          caccCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGc                                  >  2:908061/1‑127 (MQ=255)                                                                                                                                           accCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATcgcgggcgggtggtcggttccgatcagttcctgaccaagccgttcagcaaggaagaactgctcgacgcgatccgcgcccatgtgcccgggtttgccgcacctcaacaacacgcaccctg          <  1:271371‑M2/150‑120 (MQ=255)                                                                                                                                            cccg‑cccgCG‑‑GGCCTTGTCGAACAGGCCATcgcgggcgggtggtcggttccgatcagttcctgaccaagccgttcagcaaggaagaactgctcgacgcgatccgcgcccatgtgcccgggtttgccgcacctcaacaacacgcaccct           <  2:406560‑M2/148‑119 (MQ=255)                                                                                                                                            cccg‑cccgCG‑‑GGCCTTGTCGAACAGGCCATcgcgggcgggtggtcggttccgatcagttcctgaccaagccgttcagcaaggaagaactgctcgacgcgatccgcgcccatgtgcccgggtttgccgcacctcaacaacacgcaccct           >  1:406560‑M2/1‑30 (MQ=255)                                                                                                                                              cg‑cccgcG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGa       >  2:1505708/1‑150 (MQ=255)                                                                                                                                                  ccgcGatggcctgttcgacaaggcccgcgggcgggtggtcggttccgatcagttcctgaccaagccgttcagcaaggaagaactgctcgacgcgatccgcgcccatgtgcccgggtttgccgcacctcaacaacacgcaccctgaccgag      >  1:1225986‑M1/1‑5 (MQ=255)                                                                                                                                                    gcg‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTc  <  1:339299/150‑1 (MQ=255)                                                                                                                                                    gcg‑‑GGCCTTGTCGAACAGGCCATAGCGTGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCGAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTc  <  2:88376/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      AAGTAGGACCGCGCCATGGCGGGGCTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTC  >  NC_002947/5689968‑5690263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.