New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5690116	54 (0.900)	4 (0.070)	4/228	NT	7.9%	coding (283/402 nt)	pilG	pilus biosynthesis/twitching motility protein PilG
	?	NC_002947	= 5690136	42 (0.740)					coding (263/402 nt)	pilG	pilus biosynthesis/twitching motility protein PilG

CTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAGGGCATC  >  NC_002947/5689992‑5690284                                                                                                                                                    |                                                                                                                                                     cTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATcgcgg                                                                                                                                                 >  1:1225986‑M2/1‑145 (MQ=255)   cGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGAGTAGCACGAAAGTCGCGGGCTTAACGGCTTGGTCAGGAACTAACCGG‑CCCTATGCCAGGCCCCGCG‑‑TGCCTTGTCGAACAGGCCATCGCGGga                                                                                                                                               <  1:1192274/150‑1 (MQ=255)           gTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGAcagca                                                                                                                                       <  2:387152/150‑1 (MQ=255)              cGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGa                                                                                                                                    <  2:623794/150‑1 (MQ=255)               gtgtTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCGATGGCCTGTTCGACAAGGCC‑gcgggcgggtggtcggtt                                                                                                                                     >  2:1527792‑M2/1‑132 (MQ=255)                 ccgatctaGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCAATTTTTAACAGGCCATCGCGGGACGACAGCAGGATaa                                                                                                                                 <  1:1135335/143‑1 (MQ=255)                      tgAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGACCGGGATTTTCAGGAACAGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCCAACAGGCCATCGCGGGACGACAGCAGGATAACCggg                                                                                                                            <  1:115614/150‑1 (MQ=255)                      tgAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCggg                                                                                                                            <  2:1216955/150‑1 (MQ=255)                      tgAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCggg                                                                                                                            <  1:852962/150‑1 (MQ=255)                      tgAGGGGCGGCAAACCCCGGCACATGGGCGCGGATCGCGCCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCggg                                                                                                                            <  1:1502397/150‑1 (MQ=255)                         ggTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTAAAGAACTGAGCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAAcagatcgg                                                                                                                         >  2:1135335/1‑143 (MQ=255)                           tGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGACCCGACCACCCG‑CCCGCG‑‑GGCCTTTTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTc                                                                                                                       <  2:186205/150‑1 (MQ=255)                                   aCCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGGGTCCTTGAAgg                                                                                                               >  1:278740/1‑150 (MQ=255)                                     ccGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCa                                                                                                             >  1:1506040/1‑150 (MQ=255)                                       gggCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACt                                                                                                           >  2:1054430/1‑150 (MQ=255)                                                ggCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCtt                                                                                                  <  2:1506040/150‑1 (MQ=255)                                                   gcgGGTCGCGTCGAGCAGTTCTTCCTTGCTGAACGAAGTAGCCAGGAACTGATGGGACCCGACACCCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCACGGCACGACAGCAGGATAACCGGAGTGTCCTTGAAGGCACTGTTGTGCTTAAt                                                                                               >  2:521411/1‑150 (MQ=255)                                                                   aGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGgacga                                                                                                                                            >  1:246631/1‑89 (MQ=255)                                                                   aGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGgacga                                                                                                                                            <  2:246631/89‑1 (MQ=255)                                                                      tcttcCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAg                                                                            <  1:964490/150‑1 (MQ=255)                                                                        ttcCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGGCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGcc                                                                          >  2:1422122/1‑150 (MQ=255)                                                                         tcCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCg                                                                         >  1:990567/1‑150 (MQ=255)                                                                          ccTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAgg                                                                                                               <  1:265149/111‑1 (MQ=255)                                                                          ccTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAgg                                                                                                               >  2:265149/1‑111 (MQ=255)                                                                           cTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACGCG‑CCNGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGGTTACCGCGCAGGGCTGGGAGCCGTc                                                                       >  1:536118/1‑150 (MQ=255)                                                                           cTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTc                                                                       >  1:818732/1‑150 (MQ=255)                                                                              gCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAg                                                                    <  2:381673/150‑1 (MQ=255)                                                                                  aaCGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGt                                                                >  1:912421/1‑150 (MQ=255)                                                                                          ggTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑CGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAg                                                        <  1:1162992/150‑1 (MQ=255)                                                                                              aggcccTGATGGGAACCTACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGcaca                                                    <  2:912421/145‑1 (MQ=255)                                                                                              aGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGAcag                                                                                                                                         <  1:1087772/65‑1 (MQ=255)                                                                                              aGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGAcag                                                                                                                                         >  2:1087772/1‑65 (MQ=255)                                                                                                   cTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATcgac                                               <  1:1054430/150‑1 (MQ=255)                                                                                                   cTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATAGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATcgac                                               <  2:278740/150‑1 (MQ=255)                                                                                                               gACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACt                                   >  1:508470/1‑150 (MQ=255)                                                                                                                accaccCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATcgacga                                             >  2:1302074/1‑139 (MQ=255)                                                                                                                accaccCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATcgacga                                             <  1:1302074/139‑1 (MQ=255)                                                                                                                  caccCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGc                                                       <  1:908061/127‑1 (MQ=255)                                                                                                                  caccCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGc                                                       >  2:908061/1‑127 (MQ=255)                                                                                                                   accCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATcgcgggcgggtggtcggttccgatcagttcctgaccaagccgttcagcaaggaagaactgctcgacgcgatccgcgcccatgtgcccgggtttgccgcacctcaacaacacgcaccctg                               <  1:271371‑M2/150‑120 (MQ=255)                                                                                                                    cccg‑cccgCG‑‑GGCCTTGTCGAACAGGCCATcgcgggcgggtggtcggttccgatcagttcctgaccaagccgttcagcaaggaagaactgctcgacgcgatccgcgcccatgtgcccgggtttgccgcacctcaacaacacgcaccct                                <  2:406560‑M2/148‑119 (MQ=255)                                                                                                                    cccg‑cccgCG‑‑GGCCTTGTCGAACAGGCCATcgcgggcgggtggtcggttccgatcagttcctgaccaagccgttcagcaaggaagaactgctcgacgcgatccgcgcccatgtgcccgggtttgccgcacctcaacaacacgcaccct                                >  1:406560‑M2/1‑30 (MQ=255)                                                                                                                      cg‑cccgcG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGa                            >  2:1505708/1‑150 (MQ=255)                                                                                                                            gcg‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTc                       <  1:339299/150‑1 (MQ=255)                                                                                                                            gcg‑‑GGCCTTGTCGAACAGGCCATAGCGTGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCGAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTc                       <  2:88376/150‑1 (MQ=255)                                                                                                                                       gTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCtt              <  1:1505708/150‑1 (MQ=255)                                                                                                                                        tCGAACCGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTg             <  2:990567/150‑1 (MQ=255)                                                                                                                                          gAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGAACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGc           >  1:1114122/1‑150 (MQ=255)                                                                                                                                              aGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGCTCCGGGTATAGGCGTCTCGGCATGACAGCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAgg       >  1:603801/1‑150 (MQ=255)                                                                                                                                               ggCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAggg      >  2:1077279/1‑150 (MQ=255)                                                                                                                                                  cATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTg                                                               <  1:1585763/90‑1 (MQ=255)                                                                                                                                                  cATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTg                                                               >  2:1585763/1‑90 (MQ=255)                                                                                                                                                   aTCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTcga                     >  1:1499058/1‑131 (MQ=255)                                                                                                                                                   aTCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTcga                     <  2:1499058/131‑1 (MQ=255)                                                                                                                                                   aTCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAGGGCATc  >  2:870884/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CTCGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCG‑CCCGCG‑‑GGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAGGGCATC  >  NC_002947/5689992‑5690284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.