New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5873252 =	48 (0.800)	4 (0.070)	4/226	NT	7.3%	intergenic (‑42/‑100)	rppH/PP_5147	RNA pyrophosphohydrolase/haloacid dehalogenase‑like family hydrolase
	?	NC_002947	5873287 =	56 (0.990)					intergenic (‑77/‑65)	rppH/PP_5147	RNA pyrophosphohydrolase/haloacid dehalogenase‑like family hydrolase

GGGAATTGCCAGGCATCCTGGTTGATCCGTCGAGCCCATAGCACCTGCCCGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTCGACCTGGACAATACCCTCCTCGGTGGCGAC  >  NC_002947/5873104‑5873399                                                                                                                                                     |                                                                                                                                                    cgctcgcaaagatagtcaccccaggcatggtcgctgtcgccaccgaggagggtattgtccaggtcgaataaagccaggcgcatcgcggtcactcgcatcagccacagggtaggcccgcagaatacggagttttcacgcagctgcacataa                                                                                                                                                    >  1:1176861‑M1/149‑150 (MQ=255)      gcaaagatagtcaccccaggcatggtcgctgtcgccaccgaggagggtattgtccaggtcgaataaagccaggcgcatcgcggtcactcgcatcagccacagggtaggcccgcagaatacggagttttcacgcagctgcacatAAGCTTg                                                                                                                                               <  1:1216586‑M1/7‑1 (MQ=255)        gCCAGGCATCCTGGTTGATCCGTCGAGCCCATAGCACCTGCCCGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCg                                                                                                                                             >  2:1398741/1‑150 (MQ=255)                   tGGTTGATCCGTCGAGCCCATAGCACCTGCCCGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAAc                                                                                                                                  <  1:1398741/150‑1 (MQ=255)                     gTTGATCCGTCGAGCCCATAGCACCTGCCCGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAAcgc                                                                                                                                >  1:1064850/1‑150 (MQ=255)                          tCCGTCGAGCCCATAGCACCTGCCCGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGcgcccg                                                                                                                           >  2:410019/1‑150 (MQ=255)                                gAGCCCATAGCACCTGCCCGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGc                                                                                                                     <  2:738611/150‑1 (MQ=255)                                   cccATAGCACCTGCCCGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTa                                                                                                                  <  2:57820/150‑1 (MQ=255)                                    ccATAGCACCTGCCCGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTAt                                                                                                                 <  2:898851/150‑1 (MQ=255)                                       tAGCACCTGCCCGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTAtgtg                                                                                                              <  2:1588221/150‑1 (MQ=255)                                          cACCTGCCCGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAAAACAGAAGACGTACACGAGGGTATTGTTTGACTAAGATTGGGCGTGCACCAATGCGCCTGCCAAGCTTATGTGCAg                                                                                                           >  1:1264694/1‑150 (MQ=255)                                          accgaggagggtattgtccaggtcgaataaagccaggcgcatcgcggtcactcgcatcagccacagggtaggcccgcagaatacggagttttcacgcagctgcacatAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTAtg                                                                                                                <  2:936623‑M1/38‑1 (MQ=255)                                          accgaggagggtattgtccaggtcgaataaagccaggcgcatcgcggtcactcgcatcagccacagggtaggcccgcagaatacggagttttcacgcagctgcacatAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTAtg                                                                                                                >  1:936623‑M1/108‑145 (MQ=255)                                           cccTGCCCGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTCGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGc                                                                                                          <  2:945277/149‑1 (MQ=255)                                           aCCTGCCCGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTa                                                                                                                  <  2:206853/142‑1 (MQ=255)                                           aCCTGCCCGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTa                                                                                                                  >  1:206853/1‑142 (MQ=255)                                                 ccGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTg                                                                                                    >  1:1430487/1‑150 (MQ=255)                                                      atcatTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAAc                                                                                               >  1:795418/1‑150 (MQ=255)                                                          ttCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGTAGCTGCGTGAAAACTCCg                                                                                           >  1:1509223/1‑150 (MQ=255)                                                          ttCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCg                                                                                           >  2:116033/1‑150 (MQ=255)                                                             gTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACCAAGATTGGGAGGGCCGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTAt                                                                                        >  1:1186356/1‑150 (MQ=255)                                                             gTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTAt                                                                                        >  2:945139/1‑150 (MQ=255)                                                                  aaTGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTAt                                                                                                                 <  2:779082/120‑1 (MQ=255)                                                                  aaTGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTAt                                                                                                                 >  1:779082/1‑120 (MQ=255)                                                                         gccaggcgcatcgcggtcactcgcatcagccacagggtaggcccgcagaatacggagttttcacgcagctgcacatAAGCTTGCGAGCGCAGCAACGCGCCCGCCaa                                                                                                                       <  1:1401744‑M1/31‑1 (MQ=255)                                                                         gccaggcgcatcgcggtcactcgcatcagccacagggtaggcccgcagaatacggagttttcacgcagctgcacatAAGCTTGCGAGCGCAGCAACGCGCCCGCCaa                                                                                                                       >  2:1401744‑M1/77‑107 (MQ=255)                                                                           gACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTAcc                                                                          <  1:410019/150‑1 (MQ=255)                                                                              aTTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCtg                                                                       <  2:988099/150‑1 (MQ=255)                                                                               ttGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCtgt                                                                      >  2:539916/1‑150 (MQ=255)                                                                                tGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCtgtg                                                                     <  2:538664/150‑1 (MQ=255)                                                                                tGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCtgtg                                                                     <  1:945139/150‑1 (MQ=255)                                                                                    gCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTg                                                                 >  1:196958/1‑150 (MQ=255)                                                                                          aCCATCCGGGTCGATCACGACAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGa                                                           >  2:101704/1‑150 (MQ=255)                                                                                           ccATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGTGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAg                                                          >  1:214239/1‑150 (MQ=255)                                                                                            cATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGc                                                                               >  1:785936/1‑128 (MQ=255)                                                                                            cATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGc                                                                               <  2:785936/128‑1 (MQ=255)                                                                                                      gATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATg                                               >  1:963222/1‑150 (MQ=255)                                                                                                       aTCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATgc                                              >  2:1367278/1‑150 (MQ=255)                                                                                                          aCGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGcc                                           >  2:115293/1‑150 (MQ=255)                                                                                                                     cTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTc                                >  1:1462928/1‑150 (MQ=255)                                                                                                                      tCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTCg                               >  2:1216586/1‑150 (MQ=255)                                                                                                                        gCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTCGAc                             <  2:196958/150‑1 (MQ=255)                                                                                                                         cAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAACACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTCGAcc                            <  1:115293/150‑1 (MQ=255)                                                                                                                             cGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTCGACCTGGa                        <  2:1430487/150‑1 (MQ=255)                                                                                                                              gCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCGGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTCGACCTGGAc                       >  1:1333323/1‑150 (MQ=255)                                                                                                                                aTGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGc                                                             >  2:1351083/1‑110 (MQ=255)                                                                                                                                aTGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGc                                                             <  1:1351083/110‑1 (MQ=255)                                                                                                                                 tGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCg                                                                                  <  2:61296/88‑1 (MQ=255)                                                                                                                                 tGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCg                                                                                  >  1:61296/1‑88 (MQ=255)                                                                                                                                      aCGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTc                                >  2:1504784/1‑133 (MQ=255)                                                                                                                                      aCGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTc                                <  1:1504784/133‑1 (MQ=255)                                                                                                                                          aTTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTCGACCTGGACAATACCctcctc           <  2:1283470/150‑1 (MQ=255)                                                                                                                                              ttCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTCGACCTGGACAATACCCTCCTCGGTg       <  2:1064850/150‑1 (MQ=255)                                                                                                                                               tCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTCGACCTGGACAATACCCTCCTCGGTgg      <  1:539916/150‑1 (MQ=255)                                                                                                                                                 cacaAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTAc                                                                           <  2:1210352/79‑1 (MQ=255)                                                                                                                                                 cacaAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTAc                                                                           >  1:1210352/1‑79 (MQ=255)                                                                                                                                                  acaAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTCGACCTGGACACTACCGTCGTGGGTGGGGa   >  2:1319700/1‑150 (MQ=255)                                                                                                                                                   caAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTCGACCTGGACAATACCCTCCTCGGTGGCGAc  >  1:9988/1‑150 (MQ=255)                                                                                                                                                    aaaGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTa                                                                                         <  1:329914/62‑1 (MQ=255)                                                                                                                                                    aaaGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTa                                                                                         >  2:329914/1‑62 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GGGAATTGCCAGGCATCCTGGTTGATCCGTCGAGCCCATAGCACCTGCCCGGCATCATTCGTGAGAATGATCCCGACATTGGGGCGAAAACCATCCGGGTCGATCACGGCAGCAACCTCGCAAACGCATGTCAACGCATTGTTCCACAAAGCTTGCGAGCGCAGCAACGCGCCCGCCAAGCTTATGTGCAGCTGCGTGAAAACTCCGTATTCTGCGGGCCTACCCTGTGGCTGATGCGAGTGACCGCGATGCGCCTGGCTTTATTCGACCTGGACAATACCCTCCTCGGTGGCGAC  >  NC_002947/5873104‑5873399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.