New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	652768 =	58 (0.970)	4 (0.070)	4/226	NT	7.5%	intergenic (‑102/+16)	dsbD‑I/ctpL	thiol/disulfide interchange protein 1/methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	652811 =	44 (0.780)					coding (1935/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL

ATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGCGCCACTCTGCTGTGCCGTTACATCGG  >  NC_002947/652665‑652959                                                                                                                                                   |                                                                                                                                                     aTGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTc                                                                                                                                                   >  2:66445/1‑150 (MQ=255)   ggCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCACACCGCCCGGTTCAg                                                                                                                                                 <  2:642033/150‑1 (MQ=255)     cGGACTCGCGAGGTGGAACGTGCCCGGCATGCTAACGGATGCGCAGGGATAATTAGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGTCGGCGCTCGATCTCAGACCCTGAACGCTCGGACCGCCCGGTTCAGCt                                                                                                                                               >  1:859132/1‑150 (MQ=37)         agcggattcacgaactgggtgaagacaacctgcagcgcattggcgaggggcgtaaacagggtgaacagctgctgagcctgggcggtgagctgaacCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGc                                                                                                                                                <  1:1199487‑M1/50‑1 (MQ=255)         agcggattcacgaactgggtgaagacaacctgcagcgcattggcgaggggcgtaaacagggtgaacagctgctgagcctgggcggtgagctgaacCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGc                                                                                                                                                >  2:1199487‑M1/96‑145 (MQ=255)            gcgAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTTGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGcc                                                                                                                                        >  1:786152/1‑150 (MQ=255)                  tGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCt                                                                                                                                  >  1:1060600/1‑150 (MQ=255)                              ggCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTc                                                                                                                      >  2:1055250/1‑150 (MQ=255)                               agacaacctgcagcgcattggcgaggggcgtaaacagggtgaacagctgctgagcctgggcggtgagctgaaccgggcggtgcgagcgttcagggtctgagatcgagcgccgcgcgg                                                                                                                                                      <  1:578151‑M2/1‑1 (MQ=255)                               agacaacctgcagcgcattggcgaggggcgtaaacagggtgaacagctgctgagcctgggcggtgagctgaaccgggcggtgcgagcgttcagggtctgagatcgagcgccgcgcgg                                                                                                                                                      >  2:578151‑M2/117‑117 (MQ=255)                                          gATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACg                                                                                                          >  2:491836/1‑150 (MQ=255)                                          gATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACg                                                                                                          >  1:1489228/1‑150 (MQ=255)                                          agcgcattggcgaggggcgtaaacagggtgaacagctgctgagcctgggcggtgagctgaacCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCa                                                                                                                                      <  2:1393790‑M1/60‑1 (MQ=255)                                          agcgcattggcgaggggcgtaaacagggtgaacagctgctgagcctgggcggtgagctgaacCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCa                                                                                                                                      >  1:1393790‑M1/63‑122 (MQ=255)                                               gcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCAcc                                                                                                                   <  2:519749/136‑1 (MQ=255)                                               gcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCAcc                                                                                                                   >  2:230997/1‑136 (MQ=255)                                               gcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCAcc                                                                                                                   <  1:230997/136‑1 (MQ=255)                                               gcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCGGTTCAcc                                                                                                                   >  1:519749/1‑136 (MQ=255)                                                cAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTc                                                                                                    <  1:1548829/150‑1 (MQ=255)                                                      taatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAAt                                                                                              >  1:713137/1‑150 (MQ=255)                                                          tGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCTGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATgcgc                                                                                          <  2:1060600/150‑1 (MQ=255)                                                              ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCt                                                                                                                          <  1:660135/114‑1 (MQ=255)                                                              ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCt                                                                                                                          >  2:660135/1‑114 (MQ=255)                                                              ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCa                                                                                      >  2:1442180/1‑150 (MQ=255)                                                              ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCACAAGCGGCAATCGATCCCAGACCCTAAACGATCGCACCTACCACTTCTACTCGCCGCGCGGGCTCAGCAGCTCTTCACCCTGTTTACGCCCCTCGCCCATGCGCTGCa                                                                                      >  2:596050/1‑150 (MQ=21)                                                               cGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCa                                                                                                                                             <  1:856911/94‑1 (MQ=255)                                                               cGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCa                                                                                                                                             >  2:856911/1‑94 (MQ=255)                                                                      aacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTcagca                                                                                                                             >  1:354276/1‑103 (MQ=255)                                                                      aacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTcagca                                                                                                                             <  2:354276/103‑1 (MQ=255)                                                                         gTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCGCCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCAcc                                                                                                                   <  2:1193801/110‑1 (MQ=255)                                                                         gTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCAcc                                                                                                                   >  1:1193801/1‑110 (MQ=255)                                                                               gCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTc                                                                                                    >  1:1391976/1‑119 (MQ=255)                                                                               gCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTc                                                                                                    <  2:1391976/119‑1 (MQ=255)                                                                                  ggTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTc                                                                               <  2:376587/137‑1 (MQ=255)                                                                                  ggTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTc                                                                               >  1:376587/1‑137 (MQ=255)                                                                                   gTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGt                                                                 >  2:1360908/1‑150 (MQ=255)                                                                                       tgggcggtgagctgaaccgggcggtgcgagcgttcagggtctgagatcgagcgccgcccgGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCt                                                                                         >  1:1393790‑M2/61‑122 (MQ=255)                                                                                       tgggcggtgagctgaaccgggcggtgcgagcgttcagggtctgagatcgagcgccgcccgGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCt                                                                                         <  2:1393790‑M2/62‑1 (MQ=255)                                                                                        cccGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATc                                                            <  1:214217/150‑1 (MQ=255)                                                                                             taaGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTc                                                                            >  1:714325/2‑129 (MQ=255)                                                                                             taaGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTc                                                                            <  2:714325/128‑1 (MQ=255)                                                                                             gAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCcgctc                                                       <  1:792913/150‑1 (MQ=255)                                                                                                gcgcCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCcgctcgct                                                    <  2:859132/150‑1 (MQ=255)                                                                                                 gctgaaccgggcggtgcgagcgttcagggtctgagatcgagcgccgcccgGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCcgct                                                        >  2:1199487‑M2/51‑145 (MQ=255)                                                                                                 gctgaaccgggcggtgcgagcgttcagggtctgagatcgagcgccgcccgGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCcgct                                                        <  1:1199487‑M2/95‑1 (MQ=255)                                                                                                    cgcgcgGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTgg                                                <  1:596050/150‑1 (MQ=255)                                                                                                       cCGCGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCt                                                                              >  2:578151‑M1/2‑117 (MQ=255)                                                                                                       cCGCGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCt                                                                              <  1:578151‑M1/116‑1 (MQ=255)                                                                                                          GGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGa                                          >  2:1489228‑M1/1‑150 (MQ=255)                                                                                                           GCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCAGCTCGCTGTGGTGACGaa                                         <  2:246459‑M1/150‑1 (MQ=255)                                                                                                             GGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAAtc                                       <  1:1295244‑M1/150‑1 (MQ=255)                                                                                                                        tcAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAg                                                                      <  2:1504339/108‑1 (MQ=255)                                                                                                                        tcAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAg                                                                      >  1:1504339/1‑108 (MQ=255)                                                                                                                          aGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCAcc                                                                         <  2:1563643/103‑1 (MQ=255)                                                                                                                          aGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCAcc                                                                         >  1:1563643/1‑103 (MQ=255)                                                                                                                             tccTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCCGCGGCTGTCCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGCGCCAc                       <  2:43477/149‑1 (MQ=255)                                                                                                                             cccTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGCGCCAc                       <  1:1442180/150‑1 (MQ=255)                                                                                                                               cTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGt                                               >  1:1218094/1‑124 (MQ=255)                                                                                                                               cTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGt                                               <  2:1218094/124‑1 (MQ=255)                                                                                                                               cTGAACGCTCGCACCGCCCGGTTCAGAACACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGCGCCActa                     >  1:43477/1‑149 (MQ=255)                                                                                                                                        cGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGt                                                                 >  1:1465872/1‑97 (MQ=255)                                                                                                                                        cGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGt                                                                 <  2:1465872/97‑1 (MQ=255)                                                                                                                                           aCCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGCGCCACTCTGCTGTGCCGtt         >  1:1469190/1‑150 (MQ=255)                                                                                                                                              gcccgGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAACCTCGCTCACCGCGCCACTCTGCTGTGCCGTTACa      <  1:66445‑M2/145‑1 (MQ=255)                                                                                                                                               cccgGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATgcgc                                                                                          >  1:1419446‑M2/5‑65 (MQ=255)                                                                                                                                               cccgGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATgcgc                                                                                          <  2:1419446‑M2/61‑1 (MQ=255)                                                                                                                                                 cgGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGCGCCACTCTGCTGTGCCGTTACATCg   <  2:1295244‑M2/148‑1 (MQ=255)                                                                                                                                                  gGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGCGCCACTCTGCTGTGCCGTTACATCgg  <  1:491836‑M2/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     ATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGCGCCACTCTGCTGTGCCGTTACATCGG  >  NC_002947/652665‑652959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.