New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1096638 =	51 (0.850)	4 (0.070)	4/230	NT	7.9%	coding (329/726 nt)	lptB	ABC transporter ATP‑binding protein
	?	NC_002947	1096660 =	44 (0.770)					coding (307/726 nt)	lptB	ABC transporter ATP‑binding protein

GCGCAATTTCGACGCGGCGGCGTTCACCACCAGACAGGCTCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGA  >  NC_002947/1096519‑1096809                                                                                                                                              |                                                                                                                                                      gcgcAATTTCGACGCGGCGGCGTTCACCACCAGACAGGCTCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGACCTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCa                                                                                                                                               <  1:774386/150‑1 (MQ=255)             cgcgGCGGCGTTCACCACCAGACAGGCTCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCgg                                                                                                                                   <  1:369747/150‑1 (MQ=255)                ggcggcgTTCACCACCAGACATGCTCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGcga                                                                                                                                <  1:82404/150‑1 (MQ=255)                ggcggcgTTCACCACCAGACAGGCTCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGcga                                                                                                                                <  1:1644246/150‑1 (MQ=255)                            caccaGACAGGCTCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGCTGGCCATGACGTTGGCTGCGTCGGACAGCTGGc                                                                                                                    >  2:1587532/1‑150 (MQ=255)                            caccaGACAGGCTCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGc                                                                                                                    <  1:320312/150‑1 (MQ=255)                             accaGACAGGCTCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCat                                                                                                                                              >  1:396863/1‑123 (MQ=255)                             accaGACAGGCTCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCat                                                                                                                                              <  2:396863/123‑1 (MQ=255)                              ccaGACAGGCTCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCgg                                                                                                                  >  1:384083/1‑150 (MQ=255)                                  aCAGGCTCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGa                                                                                                              >  1:1218478/1‑150 (MQ=255)                                    aGGCTCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATc                                                                                                            >  1:257348/1‑150 (MQ=255)                                       cTCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAg                                                                                                         <  2:257348/150‑1 (MQ=255)                                        tCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAgg                                                                                                        >  2:183222/1‑150 (MQ=255)                                           tgccggaatcggctacctgccgcaggaagcctcgatcttccgcaagctgtcggtcgccgacaacatcatggccatccTCGAGGTCCTTGCGGGTCTCGAGGATg                                                                                                                                                   <  2:247834‑M1/27‑1 (MQ=255)                                           tgccggaatcggctacctgccgcaggaagcctcgatcttccgcaagctgtcggtcgccgacaacatcatggccatccTCGAGGTCCTTGCGGGTCTCGAGGATg                                                                                                                                                   >  1:247834‑M1/78‑104 (MQ=255)                                              cGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCt                                                                                                  >  1:1062145/1‑150 (MQ=255)                                                      tCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAgg                                                                                          >  2:660039/1‑150 (MQ=255)                                                        ccGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTGCATTACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGtg                                                                                        >  1:351142/1‑149 (MQ=255)                                                          ggATGTGGCTGATGTGGAACTCCTGCAGCAGGCGTTCGATCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGCCAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGc                                                                                      <  2:949514/150‑1 (MQ=255)                                                           gATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTCCCCCAGCATCGAGGCTTCCTGCGGCAGGTAGcc                                                                                     <  1:1276556/150‑1 (MQ=255)                                                             tgtgGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGa                                                                                   <  1:1029423/150‑1 (MQ=255)                                                                      tgtgGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCAc                                                                          <  1:183222/150‑1 (MQ=255)                                                                      tgtgGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCAc                                                                          >  1:830485/1‑150 (MQ=255)                                                                        tgGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCt                                                                                                      >  1:968477/1‑120 (MQ=255)                                                                        tgGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCt                                                                                                      <  2:968477/120‑1 (MQ=255)                                                                         ggAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACggg                                                                       >  2:1485860/1‑150 (MQ=255)                                                                          gAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGgc                                                                      >  2:503397/1‑150 (MQ=255)                                                                            aCTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGgcgc                                                                    >  1:1208222/1‑150 (MQ=255)                                                                             cTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGcgcg                                                                   <  2:1218478/150‑1 (MQ=255)                                                                                    agcagGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGc                                                            >  1:213985/1‑150 (MQ=255)                                                                                    agcagGCTTTCCAACTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGAGc                                                            >  1:394158/1‑150 (MQ=255)                                                                                      cagGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGc                                                                                                                        <  2:1105572/88‑1 (MQ=255)                                                                                      cagGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGc                                                                                                <  2:1433778/112‑1 (MQ=255)                                                                                      cagGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGc                                                                                                >  1:1433778/1‑112 (MQ=255)                                                                                      cagGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGGCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGc                                                                                                                        >  1:1105572/1‑88 (MQ=255)                                                                                         gCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATggg                                                       <  2:1208222/150‑1 (MQ=255)                                                                                          cTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGc                                                      <  1:1587532/150‑1 (MQ=255)                                                                                           tttCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGGCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGcg                                                     >  1:123225/1‑149 (MQ=255)                                                                                                aGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCtggtgg                                                >  2:1608572/1‑150 (MQ=255)                                                                                                aGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCtggtgg                                                <  2:109841/150‑1 (MQ=255)                                                                                                  ctctTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCt                                              <  1:503397/150‑1 (MQ=255)                                                                                                  ctctTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCt                                              <  2:1437054/150‑1 (MQ=255)                                                                                                   tctTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTg                                             >  2:1311580/1‑150 (MQ=255)                                                                                                    ctTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGa                                            <  1:1068858/150‑1 (MQ=255)                                                                                                                 gTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGGTGTc                               >  1:314891/1‑150 (MQ=255)                                                                                                                   catcctcgagacccgcaaggacctcgaGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCa                                                                           <  2:247834‑M2/77‑1 (MQ=255)                                                                                                                   catcctcgagacccgcaaggacctcgaGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCa                                                                           >  1:247834‑M2/28‑104 (MQ=255)                                                                                                                          GAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTAc                      >  1:660039‑M1/1‑150 (MQ=255)                                                                                                                            gacccgcaaggacctcgaGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATc                                                                                                            <  1:925942‑M2/44‑1 (MQ=255)                                                                                                                            gacccgcaaggacctcgaGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATc                                                                                                            >  2:925942‑M2/19‑62 (MQ=255)                                                                                                                                 ttGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGccc               >  1:1458485/1‑150 (MQ=255)                                                                                                                                    cGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTcc                                                                                                   <  2:1111114/63‑1 (MQ=255)                                                                                                                                    cGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTcc                                                                                                   >  1:1111114/1‑63 (MQ=255)                                                                                                                                     gggTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCAGCAGGTAGc                                                                                      <  2:1315020/75‑1 (MQ=255)                                                                                                                                     gggTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCAGCAGGTAGc                                                                                      >  1:1315020/1‑75 (MQ=255)                                                                                                                                          tcgaGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCtg                                                    <  2:314468‑M2/100‑1 (MQ=255)                                                                                                                                          tcgaGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCtg                                                    >  1:314468‑M2/5‑104 (MQ=255)                                                                                                                                              ggATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGa  <  1:1311580/150‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                      GCGCAATTTCGACGCGGCGGCGTTCACCACCAGACAGGCTCATGCCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGA  >  NC_002947/1096519‑1096809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.