| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5159794 = | 61 (1.010) | 13 (0.280) | 12/208 | 3.3 | 22.1% | intergenic (+9/+97) | PP_4542/PP_4543 | ABC transporter ATP‑binding protein/permease/hypothetical protein |
| ? | NC_002947 | 5159871 = | 45 (0.970) | intergenic (+86/+20) | PP_4542/PP_4543 | ABC transporter ATP‑binding protein/permease/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5159965‑5159794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCACGACC > NC_002947/5159871‑5160018 CTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGC < 1:194688/150‑1 CTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGG < 1:667775/150‑1 TGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGT < 2:780044/150‑1 GGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTAC < 1:526334/150‑1 GGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTAC > 2:1482719/1‑150 TCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCG > 1:636803/1‑150 TTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGG > 2:1479172/1‑52 TTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGG < 1:1479172/52‑1 GCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCG > 1:1311956/1‑150 CCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTG > 2:447316/1‑147 CCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTG < 1:447316/147‑1 CCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTA < 1:67895/92‑1 CCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTA > 2:67895/1‑92 CCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCA < 1:806528/80‑1 CCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCA > 2:806528/1‑80 CCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGG < 2:1156366/37‑1 CCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGG > 1:1156366/1‑37 GCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGG < 2:984607/62‑1 GCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGG > 1:984607/1‑62 TCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGT > 1:1203845/1‑137 TCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGT < 2:1203845/137‑1 AACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGCCCCGGCGGTAGGGCAACATCCCCCGCGCCTC > 1:1381994/1‑103 AACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGCCCCGGCGGTAGGGCAACATCCCCCGCGCCTC < 2:1381994/103‑1 AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCC > 1:303188/1‑150 GGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCC < 2:893531/150‑1 GCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCCCCGCCCGCCGCAACCCCGGG < 1:1198133/150‑1 CGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGT < 2:303188/150‑1 GGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGAC < 1:226423/96‑1 GGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGAC > 2:226423/1‑96 GGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGC > 1:367175/1‑150 GTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCGGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAACTCCTCCACCGCCCGCCGCAACCCCGGGTGCA > 1:142648/1‑150 GTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTC > 2:973661/1‑79 GTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTC < 1:973661/79‑1 CCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGT > 2:1277501/1‑150 CCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGT > 1:1433531/1‑150 CCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGT > 1:825648/1‑150 CGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTA < 2:667775/150‑1 GCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAA > 1:660435/1‑150 GCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAA > 1:1408864/1‑150 AAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGC < 2:194688/150‑1 AAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCC > 2:444908/1‑150 gGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGACGGTAGGGCAACATCCCACGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCCTTCCTGCGGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCGGCAGGTAATGCGAC > 2:336411/2‑150 AGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCAC > 1:206842/1‑150 ggCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCACGA < 2:1227707/148‑1 GCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTC > 2:347260/1‑84 GCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTC < 1:347260/84‑1 CCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCCTAGGGCGTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCACGAC < 1:780044/150‑1 CCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCACGAC > 2:1381457/1‑150 CGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCACGACC < 2:1311956/150‑1 CGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCACGACC < 2:1433531/150‑1 CTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5159965‑5159794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCACGACC > NC_002947/5159871‑5160018 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |