Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_002947	6,098,326	(CAAGCTGCG)2→1	coding (811‑819/867 nt)	PP_5350 ←	RpiR family transcriptional regulator

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	6098315	6098323	9	97 [0]	[0] 97	PP_5350	RpiR family transcriptional regulator

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6098324 =	0 (0.000)	86 (1.550)	62/248	0.0	100%	coding (821/867 nt)	PP_5350	RpiR family transcriptional regulator
	?	NC_002947	= 6098314	0 (0.000)					coding (831/867 nt)	PP_5350	RpiR family transcriptional regulator

TACCGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGACGCAAGCTGCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGGTGTCTTC  >  NC_002947/6098165‑6098460                                                                                                                                                      |                                                                                                                                                   tACCGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGa                                                                                                                                                    <  2:562140/150‑1 (MQ=255)    cGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgc                                                                                                                                                 <  2:1474821‑M2/150‑4 (MQ=255)     ggCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGGAATGCCACGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgca                                                                                                                                                <  1:1010361‑M2/150‑5 (MQ=255)      gCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaa                                                                                                                                               <  2:445166‑M2/150‑6 (MQ=255)         tctTCGCGGGCTTGTCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagct                                                                                                                                            >  1:785322‑M2/1‑142 (MQ=255)         tctTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagct                                                                                                                                            <  2:231980‑M2/150‑9 (MQ=255)           ttCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgc                                                                                                                                          >  1:271445‑M2/1‑140 (MQ=255)                 ggCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttca                                                                                                                                    >  2:1280578‑M2/1‑134 (MQ=255)                 ggCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttca                                                                                                                                    >  2:1361236‑M2/1‑134 (MQ=255)                   cTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacg                                                                                                                                  >  2:600555‑M2/1‑132 (MQ=255)                   cTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacg                                                                                                                                  <  1:891326‑M2/150‑19 (MQ=255)                    ttGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgc                                                                                                                                 <  2:1431728‑M2/150‑20 (MQ=255)                    ttGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgc                                                                                                                                 <  2:1185153‑M2/150‑20 (MQ=255)                    ttGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgc                                                                                                                                 <  2:1018715‑M2/150‑20 (MQ=255)                       ccccGTTCACACAGGAATTGCACCGATGTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCACGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctct                                                                                                                              <  2:365953‑M2/150‑23 (MQ=255)                           gTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcag                                                                                                                          >  1:1174016‑M2/1‑124 (MQ=255)                           gTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcag                                                                                                                          >  2:62453‑M2/1‑124 (MQ=255)                                 acaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGTCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                                    <  2:1148100‑M2/150‑33 (MQ=255)                                 acaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                                    <  2:724279‑M2/150‑33 (MQ=255)                                  caGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCATTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttg                                                                                                                   <  2:985929‑M2/150‑34 (MQ=255)                                    agcattgCACCGGTTGATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgac                                                                                                                 <  2:1121511‑M2/147‑36 (MQ=255)                                     gAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgacc                                                                                                                >  2:1382174‑M2/1‑114 (MQ=255)                                     gAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCAGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgacc                                                                                                                <  2:341422‑M2/150‑37 (MQ=255)                                            aCCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCATTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctag                                                                                                         >  1:985929‑M2/1‑107 (MQ=255)                                            aCCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctag                                                                                                         <  1:1316361‑M2/150‑44 (MQ=255)                                            aCCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctag                                                                                                         <  2:1030675‑M2/150‑44 (MQ=255)                                            aCCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaa                                                                                                                                               <  1:153452‑M2/112‑6 (MQ=255)                                            aCCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaa                                                                                                                                               >  2:153452‑M2/1‑107 (MQ=255)                                             ccGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctagg                                                                                                        <  1:157888‑M2/150‑45 (MQ=255)                                              cGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggc                                                                                                       <  2:1330482‑M2/150‑46 (MQ=255)                                              cGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcag                                                                                                                          >  1:1220810‑M2/1‑105 (MQ=255)                                              cGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcag                                                                                                                          <  2:1220810‑M2/131‑27 (MQ=255)                                               gATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCACGGGCAACTGCAGGGGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcc                                                                                                      <  1:1010651‑M2/150‑47 (MQ=255)                                                aTTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggccc                                                                                                     <  2:610938‑M2/150‑48 (MQ=255)                                                aTTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggccc                                                                                                     >  1:1246631‑M2/1‑103 (MQ=255)                                                      aGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtg                                                                                                                       <  2:743056‑M2/126‑30 (MQ=255)                                                      aGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtg                                                                                                                       >  1:743056‑M2/1‑97 (MQ=255)                                                          gTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggc                                                                                                       >  1:547917‑M2/1‑93 (MQ=255)                                                          gTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggc                                                                                                       <  2:547917‑M2/138‑46 (MQ=255)                                                            gCACAGAAGCCGTGGGCGCGGACAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcccgctcttcaggtggttgaccaggctaggcccgcgcgccatggc                                                                                         >  1:1248002‑M2/1‑91 (MQ=255)                                                             cacaGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggca                                                                                        <  1:1335555‑M2/150‑61 (MQ=255)                                                              acaGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaa                                                                                       <  2:556266‑M2/150‑62 (MQ=255)                                                              acaGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaa                                                                                       <  1:861418‑M2/150‑62 (MQ=255)                                                              acaGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgac                                                                                                                 <  2:468561‑M2/124‑36 (MQ=255)                                                              acaGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgac                                                                                                                 >  1:468561‑M2/1‑89 (MQ=255)                                                              acaGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTACCCTTGAATGACTTGGGCGACAGAcgcaagctgcgtttcacgccctgcaggtggctgacaagtcgagaaccgcgcgccatggcaa                                                                                       <  2:264069‑M2/150‑62 (MQ=255)                                                                aGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacg                                                                                     <  2:149519‑M2/150‑64 (MQ=255)                                                                 gTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgc                                                                                    <  2:1050615‑M2/150‑65 (MQ=255)                                                                    ccTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgccca                                                                                 >  2:157888‑M2/1‑83 (MQ=255)                                                                     cTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                                    >  1:107728‑M2/1‑82 (MQ=255)                                                                     cTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                                    <  2:107728‑M2/114‑33 (MQ=255)                                                                        tgGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggc                                                                             >  1:1018715‑M2/1‑79 (MQ=255)                                                                         gggAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggcc                                                                            <  1:1439674‑M2/150‑73 (MQ=255)                                                                                ggCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgt                                                                     <  2:547865‑M2/150‑80 (MQ=255)                                                                                 gCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggcta                                                                                                          <  1:755366‑M2/112‑43 (MQ=255)                                                                                 gCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggcta                                                                                                          >  2:755366‑M2/1‑70 (MQ=255)                                                                                               aGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggt                                                      <  2:1395773‑M2/150‑95 (MQ=255)                                                                                                     gTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaa                                                >  1:547865‑M2/1‑50 (MQ=255)                                                                                                     gTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccac                                                           >  2:160438‑M2/1‑50 (MQ=255)                                                                                                     gTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccac                                                           <  1:160438‑M2/139‑90 (MQ=255)                                                                                                           gTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgtccatggccagcacgtcgatcaccaccaggtggg                                                   >  2:587341‑M2/1‑44 (MQ=255)                                                                                                           gTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgtccatggccagcacgtcgatcaccaccaggtggg                                                   <  1:587341‑M2/141‑98 (MQ=255)                                                                                                            ttGAATTCCGTCGACCGTAGTCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcga                                         >  2:1165165‑M2/1‑43 (MQ=255)                                                                                                            ttGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcga                                         <  2:100065‑M2/150‑108 (MQ=255)                                                                                                            ttGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcga                                         >  1:1121511‑M2/1‑43 (MQ=255)                                                                                                            ttGAATTACATCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatgggaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcga                                         >  1:445166‑M2/1‑43 (MQ=255)                                                                                                               aaTTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggt                                      <  2:22956‑M2/150‑111 (MQ=255)                                                                                                                 ttCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtca                                    >  1:598533‑M2/1‑38 (MQ=255)                                                                                                                 ttCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgc                                                                                                                                                 >  1:1085105‑M2/1‑38 (MQ=255)                                                                                                                 ttCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgc                                                                                                                                                 <  2:1085105‑M2/41‑4 (MQ=255)                                                                                                                    aGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtg                                 >  1:1330482‑M2/1‑35 (MQ=255)                                                                                                                      tcgtcgGTAGTCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggg                               >  1:1148100‑M2/1‑33 (MQ=255)                                                                                                                      tcgtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcggggggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggg                               >  1:15397‑M2/1‑33 (MQ=255)                                                                                                                      tcgtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccctggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggg                               <  2:580594‑M2/150‑118 (MQ=255)                                                                                                                      tcgtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggg                               >  2:1010361‑M2/1‑33 (MQ=255)                                                                                                                       cgtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtgggg                              >  1:1243048‑M2/1‑32 (MQ=255)                                                                                                                       cgtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgagggcagtgggg                              >  1:365953‑M2/1‑32 (MQ=255)                                                                                                                           ggTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgta                          >  2:1325278‑M2/1‑28 (MQ=255)                                                                                                                           ggTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgta                          >  1:1474821‑M2/1‑28 (MQ=255)                                                                                                                                 cTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctc                    <  1:287936‑M2/150‑129 (MQ=255)                                                                                                                                 cTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctc                    <  2:857921‑M2/150‑129 (MQ=255)                                                                                                                                 cTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccagg                                                       >  1:340444‑M2/1‑22 (MQ=255)                                                                                                                                 cTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccagg                                                       <  2:340444‑M2/115‑94 (MQ=255)                                                                                                                                  ttGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcg                   >  2:99645‑M2/1‑21 (MQ=255)                                                                                                                                    gATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt                 >  1:335134‑M2/1‑19 (MQ=255)                                                                                                                                    gATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt                 >  1:149519‑M2/1‑19 (MQ=255)                                                                                                                                    gATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt                 >  1:1185153‑M2/1‑19 (MQ=255)                                                                                                                                       cGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtc              >  1:1395773‑M2/1‑16 (MQ=255)                                                                                                                                          cTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttc           >  1:724279‑M2/1‑13 (MQ=255)                                                                                                                                          cTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttc           >  2:891326‑M2/1‑13 (MQ=255)                                                                                                                                          cTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggccaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttc           >  1:1431728‑M2/1‑13 (MQ=255)                                                                                                                                            tGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttcat         >  2:1010651‑M2/1‑11 (MQ=255)                                                                                                                                             gggCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttcatg        <  2:1033705‑M2/150‑141 (MQ=255)                                                                                                                                              ggCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacg                                                                      <  2:30070‑M2/87‑79 (MQ=255)                                                                                                                                              ggCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacg                                                                      >  1:30070‑M2/1‑9 (MQ=255)                                                                                                                                                  aCAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttcatgcacgt   >  1:1050615‑M2/1‑5 (MQ=255)                                                                                                                                                   cAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttcatgcacgtc  <  1:752976‑M2/150‑147 (MQ=255)                                                                                                                                                      |                                                                                                                                                   TACCGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGACGCAAGCTGCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGGTGTCTTC  >  NC_002947/6098165‑6098460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑