New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6006630	33 (0.430)	20 (0.360)	14/194	3.7	47.6%	intergenic (+42/+57)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator
	?	NC_002947	= 6006642	20 (0.360)					intergenic (+54/+45)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

CGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTC  >  NC_002947/6006485‑6006773                                                                                                                                                  |                                                                                                                                                      cggcgCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAg                                                                                                                                                   <  2:997224/150‑1 (MQ=255)     gcTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCa                                                                                                                                               <  2:1596274/150‑1 (MQ=255)       tGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATa                                                                                                                                             <  2:1710313/150‑1 (MQ=255)              gCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCtg                                                                                                                                >  1:1221782/1‑150 (MQ=255)                aGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCtgtg                                                                                                                              <  2:544739/150‑1 (MQ=255)                 ggTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTgg                                                                                                                             <  1:1629277/150‑1 (MQ=255)                 ggTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCTACAGGGCATACG‑‑‑‑‑‑ACCTGTgg                                                                                                                             <  1:1629326/150‑1 (MQ=255)                         aTGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGc                                                                                                                     <  2:1221782/150‑1 (MQ=255)                           gAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGa                                                                                                                   <  1:23958/150‑1 (MQ=255)                             gCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGc                                                                                                                 <  1:955930/150‑1 (MQ=255)                               tGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGccc                                                                                                               <  1:325237/150‑1 (MQ=255)                                               aaGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGa                                                                                                                   >  2:174599/1‑130 (MQ=255)                                               aaGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGa                                                                                                                   <  1:174599/130‑1 (MQ=255)                                                                   aGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCt                                                                                                                                 <  1:348560/96‑1 (MQ=255)                                                                   aGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCt                                                                                                                                 >  2:348560/1‑96 (MQ=255)                                                                      ccTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCgg                                                                                                                       >  2:937797/1‑103 (MQ=255)                                                                      ccTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCgg                                                                                                                       <  1:937797/103‑1 (MQ=255)                                                                                                                                 tCGCCCGCTTCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATc                                                              >  1:564574/1‑101 (MQ=255)                                                                                                                                 tCGCCCGCTTCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATc                                                              <  2:564574/101‑1 (MQ=255)                                                                                                                                     ccGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCa                      <  1:1064106/137‑1 (MQ=255)                                                                                                                                     ccGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCa                      >  2:1064106/1‑137 (MQ=255)                                                                                                                                         tCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCg     >  2:426910/1‑150 (MQ=255)                                                                                                                                           ccACAGGTACAGGGCATACGACCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAtt                                                 >  1:971118/1‑110 (MQ=25)                                                                                                                                           ccACAGGTACAGGGCATACGACCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAtt                                                 <  2:971118/110‑1 (MQ=25)                                                                                                                                           ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAGCACGGGGCAGGATTTCCACGTCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt   >  1:1572254/1‑150 (MQ=255)                                                                                                                                           ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCaa        >  2:1307207/1‑145 (MQ=255)                                                                                                                                           ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCaa        <  1:1307207/145‑1 (MQ=255)                                                                                                                                           ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt   >  2:1571907/1‑150 (MQ=255)                                                                                                                                           ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt   >  1:1606795/1‑150 (MQ=255)                                                                                                                                           ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt   >  2:404751/1‑150 (MQ=255)                                                                                                                                           ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt   >  1:625117/1‑150 (MQ=255)                                                                                                                                           ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGAGAAGCGGCCGGTGCAGGTGATCAAAGACTCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt   >  1:523019/1‑150 (MQ=255)                                                                                                                                            cacaGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTc  >  1:1047408/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTC  >  NC_002947/6006485‑6006773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.