New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6006630	33 (0.430)	20 (0.360)	14/194	3.7	47.6%	intergenic (+42/+57)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator
	?	NC_002947	= 6006642	20 (0.360)					intergenic (+54/+45)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

GCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCC  >  NC_002947/6006498‑6006784                                                                                                                                                 |                                                                                                                                                     gCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCtg                                                                                                                                           >  1:1221782/1‑150 (MQ=255)   aGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCtgtg                                                                                                                                         <  2:544739/150‑1 (MQ=255)    ggTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTgg                                                                                                                                        <  1:1629277/150‑1 (MQ=255)    ggTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCTACAGGGCATACG‑‑‑‑‑‑ACCTGTgg                                                                                                                                        <  1:1629326/150‑1 (MQ=255)            aTGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGc                                                                                                                                <  2:1221782/150‑1 (MQ=255)              gAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGa                                                                                                                              <  1:23958/150‑1 (MQ=255)                gCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGc                                                                                                                            <  1:955930/150‑1 (MQ=255)                  tGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGccc                                                                                                                          <  1:325237/150‑1 (MQ=255)                                  aaGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGa                                                                                                                              <  1:174599/130‑1 (MQ=255)                                  aaGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGa                                                                                                                              >  2:174599/1‑130 (MQ=255)                                                      aGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCt                                                                                                                                            >  2:348560/1‑96 (MQ=255)                                                      aGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCt                                                                                                                                            <  1:348560/96‑1 (MQ=255)                                                         ccTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCgg                                                                                                                                  <  1:937797/103‑1 (MQ=255)                                                         ccTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCgg                                                                                                                                  >  2:937797/1‑103 (MQ=255)                                                                                                                    tCGCCCGCTTCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATc                                                                         <  2:564574/101‑1 (MQ=255)                                                                                                                    tCGCCCGCTTCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATc                                                                         >  1:564574/1‑101 (MQ=255)                                                                                                                        ccGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCa                                 <  1:1064106/137‑1 (MQ=255)                                                                                                                        ccGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCa                                 >  2:1064106/1‑137 (MQ=255)                                                                                                                            tCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCg                >  2:426910/1‑150 (MQ=255)                                                                                                                              ccACAGGTACAGGGCATACGACCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAtt                                                            >  1:971118/1‑110 (MQ=25)                                                                                                                              ccACAGGTACAGGGCATACGACCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAtt                                                            <  2:971118/110‑1 (MQ=25)                                                                                                                              ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAGCACGGGGCAGGATTTCCACGTCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt              >  1:1572254/1‑150 (MQ=255)                                                                                                                              ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCaa                   >  2:1307207/1‑145 (MQ=255)                                                                                                                              ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCaa                   <  1:1307207/145‑1 (MQ=255)                                                                                                                              ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt              >  1:625117/1‑150 (MQ=255)                                                                                                                              ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt              >  2:1571907/1‑150 (MQ=255)                                                                                                                              ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt              >  1:1606795/1‑150 (MQ=255)                                                                                                                              ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt              >  2:404751/1‑150 (MQ=255)                                                                                                                              ccACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGAGAAGCGGCCGGTGCAGGTGATCAAAGACTCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt              >  1:523019/1‑150 (MQ=255)                                                                                                                               cacaGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTc             >  1:1047408/1‑150 (MQ=255)                                                                                                                                       cAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTc     <  2:1047408/150‑1 (MQ=255)                                                                                                                                          ggCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGcc  >  2:1651035/1‑150 (MQ=255)                                                                                                                                             aTACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCa                                 >  2:1586207/1‑116 (MQ=255)                                                                                                                                             aTACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCa                                 <  1:1586207/116‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACG‑‑‑‑‑‑ACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCC  >  NC_002947/6006498‑6006784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.