New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 414024	54 (1.070)	10 (0.250)	9/210	3.4	18.2%	intergenic (+41/‑162)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
	?	NC_002947	= 414054	47 (1.170)					intergenic (+71/‑132)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTT  >  NC_002947/413877‑414173                                                                                                                                                    |                                                                                                                                                      cccACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTa                                                                                                                                                     <  1:688395/150‑1 (MQ=255)   cACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGAGCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACt                                                                                                                                                   <  1:628488/150‑1 (MQ=255)    aCCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTg                                                                                                                                                  >  2:242454/1‑150 (MQ=255)      cGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGca                                                                                                                                                >  1:305390/1‑150 (MQ=255)       gCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGcac                                                                                                                                               >  1:351026/1‑150 (MQ=255)         cAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAg                                                                                                                                             <  2:305390/150‑1 (MQ=255)            gCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGcc                                                                                                                                          >  1:1082151/1‑150 (MQ=255)                tGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGa                                                                                                                                      <  2:1082151/150‑1 (MQ=255)                tGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCCGa                                                                                                                                      <  2:651496/150‑1 (MQ=255)                     aaGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCAGAGGCCCTGAGCAgt                                                                                                                                 <  2:950828/150‑1 (MQ=255)                      aggaggCCGCGGTGATCGATGCGGCACAGTTTGCCGATGATTGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAgtg                                                                                                                                <  2:842608/150‑1 (MQ=255)                                ggTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAgtgt                                                                                                                               <  1:317201/141‑1 (MQ=255)                                ggTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCt                                                                                                                      <  2:351026/150‑1 (MQ=255)                                ggTGATCGAAGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAgtgt                                                                                                                               >  2:317201/1‑141 (MQ=255)                                    aTCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCTGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTgg                                                                                                                  <  1:645580/150‑1 (MQ=255)                                    aTCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTgg                                                                                                                  <  1:316388/150‑1 (MQ=255)                                      cGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAg                                                                                                                                     <  1:1705/129‑1 (MQ=255)                                      cGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAg                                                                                                                                     >  2:1705/1‑129 (MQ=255)                                      cGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGa                                                                                                                <  1:175084/150‑1 (MQ=255)                                          gCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCgg                                                                                                            <  1:456488/150‑1 (MQ=255)                                           cGGCACAGTTTGCCGATGAACGCCGTGACGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCggg                                                                                                           <  2:1112764/150‑1 (MQ=255)                                            ggCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCgg                                                                                                            >  1:675325/1‑148 (MQ=255)                                            ggCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCgg                                                                                                            <  2:675325/148‑1 (MQ=255)                                                                gCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCAtg                                                                                      >  2:378156/1‑150 (MQ=255)                                                                    ggAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAATCTGATACTGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAg                                                                                  <  1:152304/149‑1 (MQ=255)                                                                                 aTCTGGGGTGAGTTGGGTTTAAGCTGATAACGTGTCGGCTTATTCGCGGGCAAGAACTCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGGGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTcc                                                                     <  1:842795/150‑1 (MQ=39)                                                                                        gTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACAt                                                              >  1:348973/1‑150 (MQ=255)                                                                                                ggTTTAAGCAGATGCGGTGTTGGCTTTTTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACACGCCGCGCGCATGGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGaa                                                      <  1:712591/150‑1 (MQ=37)                                                                                                     aaGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAgt                                                                                                                                 >  1:46274/1‑70 (MQ=255)                                                                                                     aaGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAgt                                                                                                                                 <  2:46274/70‑1 (MQ=255)                                                                                                       gCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGa                                                                                   <  1:722562/114‑1 (MQ=255)                                                                                                       gCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGa                                                                                   >  2:722562/1‑114 (MQ=255)                                                                                                                                     tgCCCGCGCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTa                 <  1:627468/149‑1 (MQ=255)                                                                                                                                       cccGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATGTAAAGAGGGGCGCCCACTGTGAACCCGAGCCTGTAGc               >  2:295052/1‑150 (MQ=38)                                                                                                                                            tCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTccc          >  2:429643/1‑150 (MQ=255)                                                                                                                                              cccccggTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCg        >  2:316950/6‑150 (MQ=255)                                                                                                                                              ccACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCAtgt                                                                                     <  2:1053684/73‑1 (MQ=255)                                                                                                                                              ccACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCAtgt                                                                                     >  2:1208421/1‑73 (MQ=255)                                                                                                                                              ccACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCAtgt                                                                                     >  1:1053684/1‑73 (MQ=255)                                                                                                                                              ccACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCAtgt                                                                                     <  1:1208421/73‑1 (MQ=255)                                                                                                                                              ccACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGc                                                           <  2:981049/99‑1 (MQ=255)                                                                                                                                              ccACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGc                                                           >  1:981049/1‑99 (MQ=255)                                                                                                                                              ccACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCg        >  2:1107103/1‑150 (MQ=255)                                                                                                                                              ccACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCg        >  1:416319/1‑150 (MQ=255)                                                                                                                                              ccACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCg        >  2:517645/1‑150 (MQ=255)                                                                                                                                              ccACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGAGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAAAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTcccag        >  2:54388/1‑148 (MQ=255)                                                                                                                                                acaGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTa                 >  1:948627/1‑139 (MQ=255)                                                                                                                                                acaGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTa                 <  2:948627/139‑1 (MQ=255)                                                                                                                                                 cgggTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGATGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGc     <  1:295052/148‑1 (MQ=255)                                                                                                                                                  aGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGcc                                                                                         <  2:1106782/65‑1 (MQ=255)                                                                                                                                                  aGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGACCGCGAATAGGcc                                                                                         >  1:1106782/1‑65 (MQ=255)                                                                                                                                                    gTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAag                                               <  1:823917/105‑1 (MQ=255)                                                                                                                                                    gTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAag                                               >  2:823917/1‑105 (MQ=255)                                                                                                                                                    gTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGAGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGtt  >  2:669676/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTT  >  NC_002947/413877‑414173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.