New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4586100	12 (0.240)	8 (0.220)	8/190	3.3	54.1%	intergenic (+139/+78)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586128	5 (0.140)					intergenic (+167/+50)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
Rejected: Coverage evenness skew score above cutoff.

GTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGG  >  NC_002947/4585982‑4586262                                                                                                                                                    |                                                                                                                                       gTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGAGTTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGcccc                                                                                                                                     <  1:78373/150‑1 (MQ=255) cggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGcccc                                                                                                                                     >  1:352583‑M1/82‑150 (MQ=255)   gcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTg                                                                                                                                   >  1:885272‑M1/80‑150 (MQ=255)    caaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTgg                                                                                                                                  >  2:582709‑M1/79‑150 (MQ=255)               tGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGt                                                                                                                       <  1:995043/150‑1 (MQ=255)                   ctgctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTAc                                                                                                                   <  2:519284/150‑1 (MQ=255)                             gagatcagcgtggcggagattgcggctgcatctgccggttgaggtgctggcgcGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagag                                                                                                         >  1:899569‑M1/54‑150 (MQ=255)                                aGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGCTCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCTTTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTGGGAGCGGGTTTACCCGCGAAGAggcc                                                                                                      <  1:301436/150‑1 (MQ=255)                                                                                gcGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTgg                                                                                                                                  <  2:845677‑M1/72‑1 (MQ=255)                                                                                gcGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTgg                                                                                                                                  >  1:845677‑M1/3‑74 (MQ=255)                                                                                     CGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTgg                                                                                                                                  >  2:773236‑M1/1‑69 (MQ=255)                                                                                     CGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTgg                                                                                                                                  <  1:773236‑M1/69‑1 (MQ=255)                                                                                               GCGGGTAAACCCGCTCCTACCAGGGACCGTGCGGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGTGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCAt                                       <  1:112411‑M1/150‑1 (MQ=255)                                                                                                        CCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGaa                                 <  1:1173227‑M1/147‑1 (MQ=255)                                                                                                        CCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGaa                                 >  2:1173227‑M1/1‑147 (MQ=255)                                                                                                        CCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACtt                              <  2:517350‑M1/150‑1 (MQ=255)                                                                                                        CCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACtt                              <  2:516213‑M1/150‑1 (MQ=255)                                                                                                         CCGCTCCTACCAGGGGCAGCGCCG‑CATTCAAGGCCGGCACGGTCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTc                             <  1:476639‑M1/150‑1 (MQ=255)                                                                                                         CCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAAc                                                                                  <  2:667490‑M1/97‑1 (MQ=255)                                                                                                         CCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAAc                                                                                  >  1:667490‑M1/1‑97 (MQ=255)                                                                                                           GCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGAt                                                <  1:1207669‑M1/129‑1 (MQ=255)                                                                                                           GCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGAt                                                >  2:1207669‑M1/1‑129 (MQ=255)                                                                                                            CTCCTACCAGGGACCGTGCGGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGTGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGc                          >  2:112411‑M1/1‑150 (MQ=255)                                                                                                               CTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCAcc                       <  1:594521‑M1/150‑1 (MQ=255)                                                                                                                  CCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCGTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAACACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTg                    <  1:734798‑M1/150‑1 (MQ=255)                                                                                                                    AGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACt                                                   <  1:553374‑M1/117‑1 (MQ=255)                                                                                                                    AGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACt                                                   >  2:553374‑M1/1‑117 (MQ=255)                                                                                                                           gTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcggtcac            <  2:1215455/149‑1 (MQ=255)                                                                                                                           gTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcggtcac            >  1:1215455/1‑149 (MQ=255)                                                                                                                                   cTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTg                           >  1:74385/1‑126 (MQ=255)                                                                                                                                   cTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTg                           <  2:74385/126‑1 (MQ=255)                                                                                                                                    ttGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCggg  <  1:517350/150‑1 (MQ=255)                                                                                                                                        aTGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAggccgg                                                                                                    <  2:1011735/48‑1 (MQ=255)                                                                                                                                        aTGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAggccgg                                                                                                    >  1:1011735/1‑48 (MQ=255)                                                                                                                                                    |                                                                                                                                       GTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGG  >  NC_002947/4585982‑4586262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.