| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 85049 = | 97 (1.100) | 12 (0.160) | 11/214 | NT | 11.7% | intergenic (+27/+103) | aroE/PP_0075 | shikimate 5‑dehydrogenase/choline sulfate transporter |
| ? | NC_002947 | 85122 = | 97 (1.280) | intergenic (+100/+30) | aroE/PP_0075 | shikimate 5‑dehydrogenase/choline sulfate transporter | |||||
GTGATCGAGGAGTTGCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/85214‑85049‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccttgcgtcgcgat‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCCGCAACCGCCGC > NC_002947/85122‑85269 GTGATCGAGGAGTTGCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAAC > 2:1758243/1‑150 GATCGAGGAGTTGCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCATCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGG > 1:2283588/1‑150 ATCGAGGAGTTGCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGC > 1:1723835/1‑150 TCGAGGAGTTGCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCC > 1:2244939/1‑150 CGAGGAGTTGCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCT < 1:1858341/150‑1 GGAGTTGCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGTCGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGC > 1:1194829/1‑150 TGCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGC < 2:456933/150‑1 GCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGGGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCG > 1:1515700/1‑150 GCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCG > 1:1513276/1‑150 AGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGAT > 2:473663/1‑150 GAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAATGCCGCTACCACAGAGGATCGGCGTACGACGTCCTTTATGGGAACGGCCCTTCGTCGCGcta > 1:482022/1‑147 TTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGAT‑AGGCTGCAAAGCAGAC < 2:2041066/146‑1 TTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGAT‑AGGCTGCAAAGCAGAC > 1:2041066/1‑146 GGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGG < 2:407116/77‑1 GGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGG > 1:407116/1‑77 TTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCGCAAAGCAGACCCAGAATCCCAAACTCATTCCTCCAGCCGGACCCGGAACATCTCTGCCCC > 2:1885702/1‑150 AAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTC > 1:1260267/1‑150 TCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGA > 1:1836341/1‑54 TCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGA < 2:1836341/54‑1 CACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTC > 1:1490955/1‑84 CACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTC < 2:1490955/84‑1 CACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGAT‑AGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCG > 1:1837100/1‑150 ACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACC < 1:2218476/95‑1 ACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACC > 2:2218476/1‑95 GATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGC > 2:1874792/1‑150 CGACGTACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAG < 2:1260267/150‑1 GACGTACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGTTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGG < 1:1874792/150‑1 GGGGACGGCCTTGCGTCGCGAT‑AGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCACACTCCCCC > 1:82365/1‑150 GGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGG < 2:692753/132‑1 GGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGG > 1:692753/1‑132 GCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCG > 1:17732/1‑150 CTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCC > 1:1822933/1‑150 TTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCCG > 1:804591/1‑150 TTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCCG > 1:439279/1‑150 GTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAA > 2:1659643/1‑140 GTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAA < 1:1659643/140‑1 GCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCCGCAACCGC < 1:1943928/150‑1 GAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCA > 2:415557/1‑95 GAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCA < 1:415557/95‑1 AT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACCCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCCGCAACCGCCGC < 2:1339640/150‑1 AT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATCCCTCAAACCGGATCGGGCACAACTCCAC < 1:74675/65‑1 AT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATCCCTCAAACCGGATCGGGCACAACTCCAC > 2:74675/1‑65 GTGATCGAGGAGTTGCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/85214‑85049‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccttgcgtcgcgat‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCCGCAACCGCCGC > NC_002947/85122‑85269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |