| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 403269 | 90 (1.020) | 9 (0.120) | 8/218 | NT | 9.5% | intergenic (‑69/+100) | msrA/PP_0337 | peptide methionine sulfoxide reductase MsrA/sensory box protein |
| ? | NC_002947 | = 403299 | 92 (1.190) | intergenic (‑99/+70) | msrA/PP_0337 | peptide methionine sulfoxide reductase MsrA/sensory box protein | |||||
GGCAGGCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/403109‑403269‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacaggAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGTGAACAAAAACGTCATGCCCACTGC < NC_002947/403299‑403151 GGCAGGCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCC > 1:397503/1‑150GGCAGGCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCC > 1:2179414/1‑150GGCAGGCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCC < 2:137528/150‑1 AGGCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCT > 2:2180876/1‑150 GCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCC > 1:1318687/1‑150 TCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCA > 1:337732/1‑150 CAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACAGGAACA > 1:315541/1‑140 CAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACAGGAACA < 2:315541/140‑1 CCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCgaa > 1:444336/1‑112 CCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCgaa < 2:444336/115‑4 GACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTTGGAGCG < 1:2063386/150‑1 CACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGT < 2:257554/131‑1 CACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGT > 1:257554/1‑131 ACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACA > 2:1378742/1‑93 ACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACA < 1:1378742/93‑1 CAGGATTTCCGAACGCAGGAACATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACAG < 1:1969669/92‑1 CAGGATTTCCGAACGCAGGAACATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACAG > 2:1969669/1‑92 TTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCA > 1:492360/1‑60 TTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCA < 2:492360/60‑1 CTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACC < 1:1915263/93‑1 CTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACC > 2:1915263/1‑93 TGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACA > 1:2222852/1‑54 TGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACA < 2:2222852/54‑1 TTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGT > 1:26708/1‑89 TTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGT < 2:26708/89‑1 GGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGG < 1:1989268/87‑1 GGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGG > 2:1989268/1‑87 GCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAA < 1:50039/95‑1 GCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAA > 2:50039/1‑95 GCCCGCGCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGTGAACAAAAAC < 1:497737/150‑1 CGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGTGAACAAAAACGTC > 2:876094/1‑150 GCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGTGAACAAAAA > 1:941453/1‑145 GCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGTGAACAAAAA < 2:941453/145‑1 CCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAAC < 2:1590802/102‑1 CCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAAC > 1:1590802/1‑102 CACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGTGAACAAAAACGTCATGCCC > 1:1537020/1‑150 CACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGTGAACAAAAACGTCATGCCC > 1:1151368/1‑150 CACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTG < 2:1888031/129‑1 CACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTG > 1:1888031/1‑129 ACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGT > 1:1171663/1‑130 ACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGT < 2:1171663/130‑1 ACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAA < 2:509140/85‑1 ACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAA > 1:509140/1‑85 GAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGTGAACAAAAACGTCATGCCCACTGC > 2:1451820/1‑150 GGCAGGCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCTTCGCGGGCATGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/403109‑403269‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacaggAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGTGAACAAAAACGTCATGCCCACTGC < NC_002947/403299‑403151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |