| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 413997 = | 73 (0.830) | 11 (0.160) | 10/192 | NT | 20.7% | intergenic (+14/‑189) | glnE/waaF | glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II |
| ? | NC_002947 | 414083 = | 28 (0.410) | intergenic (+100/‑103) | glnE/waaF | glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II | |||||
AACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/414173‑413997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGT > NC_002947/414083‑414229 AACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTAC < 2:2316150/150‑1 GGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGG < 1:1794297/150‑1 GGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAG > 2:1733595/1‑150 GGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGG < 1:14561/150‑1 GGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCC > 1:37754/1‑150 TGCGGTACAGCCTGGCCTCCCCGCTTTATATTCAGGATCTACTACGGACCGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGC < 1:613954/150‑1 aCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTG > 1:1586491/2‑112 aCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTG < 2:1586491/111‑1 TCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGG > 1:1070192/1‑118 TCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGG < 2:1070192/118‑1 GCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCC < 2:2078234/100‑1 GCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCC > 1:2078234/1‑100 TCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCCCACCCTGAAGCCTCCC > 2:1661131/1‑150 CCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCG > 2:469169/1‑150 CCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCG > 1:2193686/1‑150 ACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAG > 1:793396/1‑150 AGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCG > 2:2044045/1‑150 AGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCG < 1:1661131/150‑1 GGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTT > 2:1020970/1‑150 GCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGC < 1:469169/150‑1 GTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACT < 1:1020970/150‑1 AGTACCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGA > 2:383352/1‑84 AGTACCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGA < 1:383352/84‑1 CTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGG > 1:2314309/1‑150 TGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGC > 2:1603147/1‑150 GAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATA < 1:2102769/133‑1 GAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATA > 2:2102769/1‑133 AGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGA < 2:310722/106‑1 AGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGA > 1:310722/1‑106 GCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGT > 1:906267/1‑150 TTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTA < 2:1410432/89‑1 TTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTA > 1:1410432/1‑89 GCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGC < 1:1603147/150‑1 CCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAG > 2:1882667/1‑117 CCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAG < 1:1882667/117‑1 CCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTT < 1:682824/101‑1 CCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTT > 2:682824/1‑101 GCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACA < 2:1775194/150‑1 AATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGG < 1:1094099/150‑1 ATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGT < 2:2158061/150‑1 AACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/414173‑413997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGT > NC_002947/414083‑414229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |