| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1016395 = | 86 (0.970) | 5 (0.060) | 5/234 | NT | 5.4% | coding (714/825 nt) | PP_0876 | AraC family transcriptional regulator |
| ? | NC_002947 | 1016444 = | 95 (1.140) | coding (665/825 nt) | PP_0876 | AraC family transcriptional regulator | |||||
GCCGACGCCAGCGGCTACAGCCGCAACCAGATTTCCTACCTGCTCAACCAGGTGCTGGGGCAAAGCTTCTACCGCTACGTCAACCAGGCACGCCTGCAGCACCTGATGGCCAGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1016550‑1016395‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggccATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAGGGGCGTTG > NC_002947/1016444‑1016592 GCCGACGCCAGCGGCTACAGCCGCAACCAGATTTCCTACCTGCTCAACCAGGTGCTGGGGCAAAGCTTCTACCGCTACGTCAACCAGGCACGCCTGCAGCACCTGATGGCCAGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAG < 1:2058865/150‑1 CCGACGCCAGCGGCTACAGCCGCAACCAGATTTCCTACCTGCTCAACCAGGTGCTGGGGCAAAGCTTCTACCGCTACGTCAACCAGGCACGCCTGCAGCACCTGATGGCCAGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGC < 1:1014995/150‑1 CGACGCCAGCGGCTACAGCCGCAACCAGATTTCCTACCTGCTCAACCAGGTGCTGGGGCAAAGCTTCTACCGCTACGTCAACCAGGCACGCCTGCAGCACCTGATGGCCAGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCT > 1:1561817/1‑150 CAGCGGCTACAGCCGCAACCAGATTTCCTACCTGCTCAACCAGGTGCTGGGGCAAAGCTTCTACCGCTACGTCAACCAGGCACGCCTGCAGCACCTGATGGCCAGCCTCGGCGACGACAGCGTCTAGGCGACGATCGACGAGCTGGactt > 2:492427/1‑146 AAGCTTCTACCGCTACGTCAACCAGGCACGCCTGCAGCACCTGATGGCCAGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGG > 1:1174708/1‑92 AAGCTTCTACCGCTACGTCAACCAGGCACGCCTGCAGCACCTGATGGCCAGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGG < 2:1174708/92‑1 TGATGGCCAGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGGCCTTCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTG > 1:1579616/1‑133 TGATGGCCAGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGGCCTTCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTG < 2:1579616/133‑1 AGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGGCCATCAGGTGCTGCAGGCGTGCCTG > 2:486364/1‑68 AGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGGCCATCAGGTGCTGCAGGCGTGCCTG < 1:486364/68‑1 CTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCG > 1:14841/1‑150 TGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAGGGGC > 1:1274632/1‑150 TGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGC < 1:1569040/106‑1 TGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGC > 2:1569040/1‑106 GGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAGGGGCG > 2:575931/1‑150 CCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTC < 2:1318149/124‑1 CCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTC > 1:1318149/1‑124 CATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAGGGGCGTTG > 1:2019123/1‑150 CATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAGGGGCGTTG > 1:1625929/1‑150 CATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGC < 2:1136426/127‑1 CATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGC > 1:1136426/1‑127 CATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGA > 1:573707/1‑65 CATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGA < 2:573707/65‑1 GCCGACGCCAGCGGCTACAGCCGCAACCAGATTTCCTACCTGCTCAACCAGGTGCTGGGGCAAAGCTTCTACCGCTACGTCAACCAGGCACGCCTGCAGCACCTGATGGCCAGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1016550‑1016395‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggccATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAGGGGCGTTG > NC_002947/1016444‑1016592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |