New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1114899	34 (0.390)	9 (0.130)	9/198	NT	20.7%	intergenic (‑88/+91)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	= 1114925	42 (0.600)					intergenic (‑114/+65)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase

TCAGGGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCAC‑‑‑AGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1114726‑1114899 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgacacaaggccgctcccac‑‑‑aggaCGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAACCCACCCTGCACCCG  <  NC_002947/1114925‑1114782                                                                                                                                                                                                                                                                                                                                   TCAGGGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTG                                                                                                                                                                             >  2:1467203/1‑150     GGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGC                                                                                                                                                                            <  1:492752/147‑1     GGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGC                                                                                                                                                                            >  2:492752/1‑147      GTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACA                                                                                                                                                                        >  1:1147451/1‑150      GTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCAGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACA                                                                                                                                                                        >  2:1445867/1‑150         GGCCTTGATCAGGCTGGGGAAGGCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAA                                                                                                                                                                     <  1:454434/150‑1          GCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGAC                                                                                                                                                                         >  2:199628/1‑145          GCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGAC                                                                                                                                                                         <  1:199628/145‑1           CCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGG                                                                                                                                                                   >  1:280917/1‑150           CCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCATGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGG                                                                                                                                                                   >  1:719908/1‑150           CCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGCCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGG                                                                                                                                                                   <  1:2095854/150‑1            CTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGC                                                                                                                                                                  <  2:287857/150‑1               GATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGC                                                                                                                                                               <  1:1467203/150‑1                 TCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTC                                                                                                                                                             >  2:1767886/1‑150                       TGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCAC‑‑‑AG                                                                                                                                                    >  1:1790540/1‑150                         GGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTACTGGCGTGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCAC‑‑‑AGGA                                                                                                                                                  <  1:734845/150‑1                                         CCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCT                                                                                                                                                              <  1:561399/125‑1                                         CCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCT                                                                                                                                                              >  2:561399/1‑125                                         CCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTCGCGACACAAGGCCGCTCCCAC‑‑‑AGGACGGCGCCAACCTTCAA                                                                                                                                  >  1:272776/1‑150                                                         CGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTCGCGACACAAGGCCGCTCCCAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGT                                                                                                                  <  2:272776/150‑1                                                             TGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCAGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTG                                                                                                                 <  1:1445867/150‑1                                                                                                CAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCAC                                                                                                                          <  2:551534/103‑1                                                                                                CAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCAC                                                                                                                          >  1:551534/1‑103                                                                                                                     TTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCG                                                                                                           >  2:120651/1‑97                                                                                                                     TTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCG                                                                                                           <  1:120651/97‑1                                                                                                                                        TGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCAC‑‑‑AGGTCGGCGCCAACCTTCAAGGCGCCACCCTCCT                                                                                                                    >  2:1346763/1‑69                                                                                                                                        TGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCT                                                                                                                    <  1:1346763/69‑1                                                                                                                                                      GCGACACAAGGCCGCTCCCAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACTTGGCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGGCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAA                     >  1:1590926/1‑150                                                                                                                                                         ACACAAGGCCGCTCCCAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAA                  >  1:1154980/1‑150                                                                                                                                                           ACAAGGCCGCTCCCAC‑‑‑AGGACGGCGCCACCCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAAC                <  1:1683516/150‑1                                                                                                                                                           ACAAGGCCGCTCCCAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAAC                <  1:857833/150‑1                                                                                                                                                           ACAAGGCCGCTCCCAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAAC                <  1:2251190/150‑1                                                                                                                                                                GCCGCTCCCAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGTGGGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAACCCACC           >  2:329388/1‑150                                                                                                                                                                GCCGCTCCCAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCAT                              <  2:2030708/131‑1                                                                                                                                                                GCCGCTCCCAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCAT                              >  1:2030708/1‑131                                                                                                                                                                        CAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAA                 <  1:689879/136‑1                                                                                                                                                                        CAC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAA                 >  2:689879/1‑136                                                                                                                                                                         AC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAACCCACCCTGCACCCG  >  2:2090523/1‑150                                                                                                                                                                         AC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTA                                                 <  1:996998/103‑1                                                                                                                                                                         AC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTA                                                 >  2:996998/1‑103                                                                                                                                                                         AC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTAGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAG                                              >  1:948396/1‑106                                                                                                                                                                         AC‑‑‑AGGACGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTAGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAG                                              <  2:948396/106‑1                                                                                                                                                                                                                                                                                                                                   TCAGGGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCAC‑‑‑AGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1114726‑1114899 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgacacaaggccgctcccac‑‑‑aggaCGGCGCCAACCTTCAAGGCGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCTGCGCAGCAGCCCCAGGGTCTTCAAGCCACCGCTCGTATAGGGCTGGACACTGCCATGACCCCGAACAAACCCACCCTGCACCCG  <  NC_002947/1114925‑1114782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.