New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1149945	66 (0.750)	4 (0.050) +GCCAACACCGT	4/226	NT	5.8%	intergenic (‑186/+71)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	4333121 =	76 (0.860)					intergenic (+17/+67)	PP_3804/yaiW	hypothetical protein/lipoprotein

ACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1149855‑1149945 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGG  >  NC_002947/4333121‑4333154                                                                                            |||||||||||                                   ACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG   <  1:528110/135‑1 ACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG   >  2:528110/1‑135                 TTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCG    <  1:99540/118‑1                 TTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCG    >  2:99540/1‑118                                                                                             CCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGG  <  1:1707004/44‑1                                                                                             CCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGG  >  2:1707004/1‑44                                                                                            |||||||||||                                   ACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1149855‑1149945 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGG  >  NC_002947/4333121‑4333154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.