| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1570443 = | 37 (0.420) | 6 (0.090) | 6/196 | NT | 15.3% | intergenic (+9/‑179) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease |
| ? | NC_002947 | 1570521 = | 37 (0.530) | intergenic (+87/‑101) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease | |||||
CTCCTGGAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1570611‑1570443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttccccgcgaagaggccTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGCAAGCGCATCT > NC_002947/1570521‑1570667 CTCCTGGAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGG < 1:1088024/150‑1 TCCTGGAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCTTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGG < 2:395943/150‑1 GTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCC > 2:2189704/1‑148 GTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCC < 1:2189704/148‑1 AGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGA < 2:459080/150‑1 TTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGC < 1:1298716/127‑1 TTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGC > 2:1298716/1‑127 AGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTG < 1:575338/54‑1 AGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTG > 2:575338/1‑54 CCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGC > 1:16513/1‑99 CCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGC < 2:16513/99‑1 CGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCA > 1:2168099/1‑81 CGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCA < 2:2168099/81‑1 CACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTAC < 1:701482/126‑1 CACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTAC > 2:701482/1‑126 GAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGC > 2:751652/1‑150 GCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAA > 1:1890410/1‑150 CTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAA > 1:1377961/1‑149 CTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAA < 2:1377961/149‑1 TTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTA < 2:1969380/84‑1 TTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTA > 1:1969380/1‑84 CCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCA < 1:1147819/150‑1 CGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACC > 2:473502/1‑94 CGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACC < 1:473502/94‑1 AGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGCAAGCGC < 2:1088024/150‑1 GCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTAGCTAGGACC > 2:963764/1‑85 GCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACACAGCAAGCGCATCT > 2:2171244/1‑150 GCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACC < 1:963764/85‑1 CTCCTGGAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1570611‑1570443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttccccgcgaagaggccTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGCAAGCGCATCT > NC_002947/1570521‑1570667 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |