| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1750302 = | 120 (1.360) | 7 (0.090) | 7/222 | NT | 6.2% | intergenic (‑25/‑64) | PP_1549/PP_1550 | Cro/CI family transcriptional regulator/Cro/CI family transcriptional regulator |
| ? | NC_002947 | 1750339 = | 104 (1.320) | intergenic (‑62/‑27) | PP_1549/PP_1550 | Cro/CI family transcriptional regulator/Cro/CI family transcriptional regulator | |||||
ATCCGCCCATTGGCGGACGGCCTCATAGGTCACCCCTAGCGCCTTCGCCAGGGCTGAAATAGACCCGAAATGTTGGATTGCCTGGCTCTTGGTCATGGCGACCTCCTCTGCTCGTCCAGGCATTCAAGCATGCTTGCATATTCAAAA‑‑CAAGCATGCTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1750461‑1750302‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagcatgcttgaATGCCTGGACGAGCAGAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCGCCAGTACC > NC_002947/1750339‑1750483 ATCCGCCCATTTGCGGACGGCCTCATAGCTGACCCCTAGCGCCTTCGCCAGGGCTGAAATAGACCCTAAAAGTTCTATTGCCTGGCGCTTGGCCATCGCGACCTCCTCTGCTCGTCCAGGCATGCAAGCATGCTTGCATATTCAAAA‑‑CAA < 2:361367/150‑1ATCCGCCCATTGGCGGACGGCCTCATAGGTCACCCCTAGCGCCTTCGCCAGGGCTGAAATAGACCCGAAATGTTGGATTGCCTGGCTCTTGGTCATGGCGACCTCCTCTGCTCGTCCAGGCATTCAAGCATGCTTGCATATTCAAAA‑‑CAA > 2:1061434/1‑150 CATTGGCGGACGGCCTCATAGGTCACCCCTAGCGCCTTCGCCAGGGCTGAAATAGACCCGAAATGTTGGATTGCCTGGCTCTTGGTCATGGCGACCTCCTCTGCTCGTCCAGGCATTCAAGCATGCTTGCATATTCAAAA‑‑CAAGCATGCT < 2:996203/150‑1 TGGCGGACGGCCTCATAGGTCACCCCTAGCGCCTTCGCCAGGGCTGAAATAGACCCGAAATGTTGGATTGCCTGGCTCTTGGTCATGGCGACCTCCTCTGCTCGTCCAGGCATTCAAGCATGCTTGCATATTCAAAA‑‑CAAGCATGCTTGA < 2:1232039/150‑1 CACCCCTAGCGCCTTCGCCAGCGCTGAAATAGACCCGAAATGTTGGATTGCCTGGCTCTTGGTCATGGCGACCTCCTCCGCTCGTCCAGGCATTCAAGCATGCCTG‑‑TTTTGAATATGCAAGCATGCTTGAATGCCTGGACGAGCAGAGGA < 2:685094/150‑1 CTTCGCCAGGGCTGAAATAGACCCGAAATGTTGGATTGCCTGGCTCTTGGTCATGGCGACCTCCTCTGCTCGTCCAGGCATTCAAGCATGCTTGCATATTCAAAA‑‑CAAGCATGCTT > 2:1590693/1‑116 CTTCGCCAGGGCTGAAATAGACCCGAAATGTTGGATTGCCTGGCTCTTGGTCATGGCGACCTCCTCTGCTCGTCCAGGCATTCAAGCATGCTTGCATATTCAAAA‑‑CAAGCATGCTT < 1:1590693/116‑1 TCAAGCATGCTTGCATATTCAAAA‑‑CAAGCATGCTTGAATGCCTGGACGAGCAGAGGAGGTCGCCA > 1:1924539/1‑65 TCAAGCATGCTTGCATATTCAAAA‑‑CAAGCATGCTTGAATGCCTGGACGAGCAGAGGAGGTCGCCA < 2:1924539/65‑1 GCATGCTTGCATATTCAAAA‑‑CAAGCATGCTTGAATGCCTGGACGAGCAGAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTAT < 2:1107687/98‑1 GCATGCTTGCATATTCAAAA‑‑CAAGCATGCTTGAATGCCTGGACGAGCAGAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTAT > 1:1107687/1‑98 CTTGCATATTCAAAA‑‑CAAGCATGCTTGAATGCCTGGACGAGCAGA > 2:1500129/1‑45 CTTGCATATTCAAAA‑‑CAAGCATGCTTGAATGCCTGGACGAGCAGA < 1:1500129/45‑1 CAAGCATGCTTGAATGCCTGGACGAGCAGAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCG < 1:996203/150‑1 AAGCATGCTTGAATGCCTGGACGAGCAGAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCGC < 2:1796707/150‑1 AAGCATGCTTGAATGCCTGGACGAGCAGAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGA < 2:1942418/106‑1 AAGCATGCTTGAATGCCTGGACGAGCAGAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGA > 1:1942418/1‑106 CATGCTTGAATGCCTGGACGAGCAGAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTCTAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCGCCAG > 1:155222/1‑150 ATGCTTGAATGCCTGGACGAGCAGAGGAGGTCGCCATGACTAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCGCCAGT > 2:968043/1‑150 ATGCTTGAATGCCTGGACGAGCAGAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCG > 2:120494/1‑128 ATGCTTGAATGCCTGGACGAGCAGAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCG < 1:120494/128‑1 CTTGAATGCCTGGACGAGCAGAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCGCCAGTACC > 2:1456492/1‑150 AATGCCTGGACGAGCAGAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGG < 2:268872/119‑1 AATGCCTGGACGAGCAGAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGG > 1:268872/1‑119 ATCCGCCCATTGGCGGACGGCCTCATAGGTCACCCCTAGCGCCTTCGCCAGGGCTGAAATAGACCCGAAATGTTGGATTGCCTGGCTCTTGGTCATGGCGACCTCCTCTGCTCGTCCAGGCATTCAAGCATGCTTGCATATTCAAAA‑‑CAAGCATGCTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1750461‑1750302‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagcatgcttgaATGCCTGGACGAGCAGAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCGCCAGTACC > NC_002947/1750339‑1750483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |