| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1886437 = | 94 (1.070) | 7 (0.080) | 7/236 | NT | 7.4% | coding (1062/1488 nt) | rmuC | DNA recombination limiting inversions protein |
| ? | NC_002947 | 1886464 = | 86 (1.020) | coding (1089/1488 nt) | rmuC | DNA recombination limiting inversions protein | |||||
GGCAATTTCGCGGGCGTTCTGCCCTTGACGCTCCTGCTTCCACAGGCTGTCGATAACCCGCAAGGTGGCCAGCAACGTGGTAGGGCTGACAATCACGATCTGCCGGTCGAAGGCCTCCTGGAACAGGTTCGGCTCGGCCTGCAGGGC‑C‑GCCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1886590‑1886437‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaaCCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGGGTTATCGACAGCCTGTGGAAGCAGGAGCGTCAAGGGCAGAACGCCCGCGAAATTGCCGAGCGGGCCGGCTGGCTCTAC > NC_002947/1886464‑1886611 GGCAATTTCGCGGGCGTTCTGCCCTTGACGCTCCTGCTTCCACAGGCTGTCGATAACCCGCAAGGTGGCCAGCAACGTGGTAGGGCTGACAATCACGATCTGCCGGTCGAAGGCCTCCTGGAACAGGTTCGGCTCGGCCTGCAGGGC‑C‑GC > 1:2324881/1‑150GGCAATTTCGCGGGCGTTCTGCCCTTGACGCTCCTGCTTCCACAGGCTGTCGATAACCCGCAAGGTGGCCAGCAACGTGGTAGGGCTGACAATCACGATCTGCCGGTCGAAGGCCTCCTGGAACAGGTTCGGCTCGGCCTGCAGGGC‑C‑GC < 1:774274/150‑1GGCAATTTCGCGGGCGTTCTGCCCTTGACGCTCCTGCTTCCACAGGCTGTCGATAACCCGCAAGGTGGCCAGCAACGTGGTAGGGCTGACAATCACGATCTGCCGGTCGAAGGCCTCCTGGAACAGGTTCGGCTCGGCCTGCAGGGC‑C‑GC > 2:1918977/1‑150 CTGCCCTTGACGCTCCTGCTTCCACAGGCTGTCGATAACCCGCAAGGTGGCCAGCAACGTGGTAGGGCTGACAATCACGATCTGCCGGTCGAAGGCCTCCTGGAACAGGTTCGGC‑GGCCCTGCAGGCCGA‑GCCGAACCTGTTCCAGGAGG < 1:973203/150‑1 ACAGGCTGTCGATAACCCGCAAGGTGGCCAGCAACGTGGTAGGGCTGACAATCACGATCTGCCGGTCGAAGGCCTCCTGGAACAGGTTCGGC‑GGCCCTGCAGGCCGA‑GCCGAACCTGTTC < 1:324956/120‑1 ACAGGCTGTCGATAACCCGCAAGGTGGCCAGCAACGTGGTAGGGCTGACAATCACAATCTGCCGGTCGAAGGCCTCCTGGAACAGGTTCGGC‑GGCCCTGCAGGCC‑GAGCCGAACCTGTTC > 2:324956/1‑120 GTTCGGCTCGGCCTGCGGGGC‑C‑GCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGG > 1:1699966/1‑98 GTTCGGCTCGGCCTGCGGGGC‑C‑GCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGG < 2:1699966/98‑1 TTCGGCTCGGCCTGCAGGGC‑C‑GCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCG < 1:1449459/96‑1 TTCGGCTCGGCCTGCAGGGC‑C‑GCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCG > 2:1449459/1‑96 CCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGGGTTATCGACAGCCT < 2:85612/89‑1 CCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGGGTTATCGACAGCCT > 1:85612/1‑89 GAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGGGTTATCGACAGCCTGTGGAAGCAGGAGCGTCAAGGGCAGAACGCCCGCGAAATTGCCGAGCGGGCCGGCTGGCTCTA > 1:1344458/1‑150 GAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGGGTTATCGACAGCCTGTGGAAGCAGGAGCGTCAAGGGCAGAACGCCCGCGAAA < 1:942363/125‑1 GAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGGGTTATCGACAGCCTGTGGAAGCAGGAGCGTCAAGGGCAGAACGCCCGCGAAA > 2:942363/1‑125 AACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGCTTGTGAGCCCTACCACGTTGCTGGCCACCTTGCTGGTTATACCAATCCAAGGGAAGCAGGAGCGTCAAGGGCAGAACGCCCGCGAAATTGCCGAGCGGGCCGGCTGGCTCTAC > 1:1112644/1‑150 AACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGGGTTATCGACAGCCTGTGGAAGCAGGAGCGTCAAGGGCAGAACGCCCGCGAAATTGCCGAGCGGGCCGGCTGGCTCTAC > 2:1706202/1‑150 AACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGGGTTATCGACAGCCTGTGGAAGCAGGAGCGTCAAGGGCAGAACGCCCGCGAAATTGCCGAGCGGGCCGGCTGGCTCTAC < 2:120176/150‑1 AACCTGGTCCAGGAGGCCTTCGACCTGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGGGTTATCGACAGCCTGTGGAAGCAGGAGCGTCAAGGGCAGAACGCCCTCGAAATTGCCGAGCGGGCCGGCTGGCTCTAC < 2:836314/150‑1 GGCAATTTCGCGGGCGTTCTGCCCTTGACGCTCCTGCTTCCACAGGCTGTCGATAACCCGCAAGGTGGCCAGCAACGTGGTAGGGCTGACAATCACGATCTGCCGGTCGAAGGCCTCCTGGAACAGGTTCGGCTCGGCCTGCAGGGC‑C‑GCCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1886590‑1886437‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaaCCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGGGTTATCGACAGCCTGTGGAAGCAGGAGCGTCAAGGGCAGAACGCCCGCGAAATTGCCGAGCGGGCCGGCTGGCTCTAC > NC_002947/1886464‑1886611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |