New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2664051 =	49 (0.560)	6 (0.080)	5/200	NT	13.9%	intergenic (+33/‑130)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase
	?	NC_002947	2664132 =	35 (0.490)					intergenic (+114/‑49)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase

CAGGTCGGTGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2664222‑2664051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGCT  >  NC_002947/2664132‑2664280                                                                                                                                                                                                                                                                                                                                    CAGGTCGGTGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGC                                                                                                                                                                              >  2:1958517/1‑150  AGGTCGGTGCCTGGCAGGTGCTTGCGGTATGCAGTGTACATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCAAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCA                                                                                                                                                                             >  1:1893063/1‑150         TGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTGAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG                                                                                                                                                                      <  1:408172/150‑1         TGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG                                                                                                                                                                      <  1:1958517/150‑1          GCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGG                                                                                                                                                                     <  1:1478545/150‑1             TGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGCTTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGC                                                                                                                                                                              >  1:871184/1‑138             TGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCAC                                                                                                                                                                  >  2:808801/1‑150             TGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGC                                                                                                                                                                              <  2:871184/138‑1                CAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCC                                                                                                                                                               <  1:1662943/150‑1                 AGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCC                                                                                                                                                              >  2:1330542/1‑150                 AGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCC                                                                                                                                                              >  2:2162606/1‑150                               TGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGC                                                                                                                                                                        >  2:585924/1‑126                               TGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGC                                                                                                                                                                        <  1:585924/126‑1                                           CATGGAATCAGGCTCGTTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTTCACAGTGGTTACAAGGCCGGGTGCATTCGC                                                                                                                                                                        >  1:1156400/1‑114                                           CATGGAATCAGGCTCGTTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTTCACAGTGGTTACAAGGCCGGGTGCATTCGC                                                                                                                                                                        <  2:1156400/114‑1                                                AATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG                                                                                                                                                                      >  2:669667/1‑111                                                AATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG                                                                                                                                                                      <  1:669667/111‑1                                                                                                    GCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCG                                                                                                                                                                       >  1:1851187/1‑58                                                                                                    GCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCG                                                                                                                                                                       <  2:1851187/58‑1                                                                                                          CCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCAT                                                                                                        <  1:1698421/115‑1                                                                                                          CCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCAT                                                                                                        >  2:1698421/1‑115                                                                                                           CGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCTCAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCAC                                                                   >  1:2121830/1‑150                                                                                                           CGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCAT                                                                                          <  1:1267841/128‑1                                                                                                           CGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCAT                                                                                          >  2:1267841/1‑128                                                                                                              GAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCTCAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGA                                                                <  2:2121830/150‑1                                                                                                                   CGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGC                                                                                                                                                                        <  1:1599342/42‑1                                                                                                                   CGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGC                                                                                                                                                                        >  2:1599342/1‑42                                                                                                                                                      CATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATC                        >  1:879616/1‑150                                                                                                                                                      CATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATC                        <  2:1478545/150‑1                                                                                                                                                        TTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAA                      <  2:525280/150‑1                                                                                                                                                           GCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCC                   >  1:837667/1‑150                                                                                                                                                             GGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCG                 >  2:1151246/1‑150                                                                                                                                                                   tCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGCACAC‑GTGTGCTCTCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCT           <  1:1571544/149‑1                                                                                                                                                                    CCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTG                                                            <  2:1032715/100‑1                                                                                                                                                                    CCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTG                                                            >  1:1032715/1‑100                                                                                                                                                                     CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGAC                                                         >  2:1375264/1‑102                                                                                                                                                                     CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGAC                                                         <  1:1375264/102‑1                                                                                                                                                                           CCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGC   >  1:692426/1‑150                                                                                                                                                                           CCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGC                                              >  2:2224239/1‑107                                                                                                                                                                           CCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGC                                              <  1:2224239/107‑1                                                                                                                                                                            CACAGGTACGGTGAAACCTTCCGCCCAACGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGCT  <  2:879616/150‑1                                                                                                                                                                                                                                                                                                                                    CAGGTCGGTGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2664222‑2664051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAC‑CGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGCT  >  NC_002947/2664132‑2664280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.