| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2864030 = | 79 (0.900) | 4 (0.050) | 4/228 | NT | 5.2% | coding (1047/1194 nt) | gllR | HTH‑type transcriptional regulator GalR |
| ? | NC_002947 | 2864064 = | 74 (0.910) | coding (1081/1194 nt) | gllR | HTH‑type transcriptional regulator GalR | |||||
CCTCCTGGGCTCACGCCTGCTCGGTGATGACCTGGCGGATACAGGCCATCAGCGCGACTGCCGCCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2864187‑2864030‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctggcaCTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGATGGCCTGTATCCGCCAGGTCATCACCGAGCAGGCGTGAGCCCAGGAGGGTGCCTTAAAGTAGGCTCAGCGGGT > NC_002947/2864064‑2864212 CCTCCTGGGCTCACGCCTGCTCGGTGATGACCTGGCGGATACAGGCCATCAGCGCGACTGCCGCCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGC > 1:1075343/1‑150CCTCCTGGGCTCACGCCTGCTCGGTGATGAACTGGCGGATACAGGCCATCAGCGCGACTGCCGCCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGC > 1:450559/1‑150 TCCTGGGCTCACGCCTGCTCGGTGATGACCTGGCGGATACAGGCCATCAGCGCGACTGCCGCCGGTGACTGCAGGCAGCCACTGCGCTGCAAGATGCCGATGGCGCGGGCAGTGCCTGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCG > 1:1551982/1‑150 GCTCACGCCTGCTCGGTGATGACCTGGCGGATACAGGCCATCAGCGCGACTGCCGCCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCA > 2:1811715/1‑150 GATACAGGCCATCAGCGCGACTGCCGCCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCT < 2:553399/117‑1 GATACAGGCCATCAGCGCGACTGCCGCCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCT > 1:553399/1‑117 AGGCCATCAGCGCGACTGCCGCCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGG < 1:268036/114‑1 AGGCCATCAGCGCGACTGCCGCCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGG > 2:268036/1‑114 GCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTG < 2:1258322/79‑1 GCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTG > 1:1258322/1‑79 CGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCA < 2:1110243/107‑1 CGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCA > 1:1110243/1‑107 TGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGATGGCCT > 1:1623179/1‑116 TGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGATGGCCT < 2:1623179/116‑1 CCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGATGGCCTGTATCCGCCAGGTCATCACCGAGCAGGCGTGAGCCCAGGAGGGT < 1:1391420/135‑1 CCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGATGGCCTGTATCCGCCAGGTCATCACCGAGCAGGCGTGAGCCCAGGAGGGT > 2:1391420/1‑135 CACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCCGGACAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGATGGCCTGTATCCGCCAGGTCATCACCGAGCAGGCGTGAGCCCAGGAGGGTGCCTTAAAGTACGCTCAGCGGG < 1:1289768/150‑1 ACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGTCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGATGGCCTGTATCCGCCAGGTCATCACCGAGCAGGCGTGAGCCCAGGAGGGTGCCTTAAAGTAGGCTCAGCGGGT < 2:1686014/150‑1 ACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGATGGCCTGTATCCGCCAGGTCATCACCGAGCAGGCGTAAGCCCAGGAGGGTGCCTTAAAGTAGGCTCAGCGGGT > 1:1342631/1‑150 ACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGAT < 1:174727/78‑1 ACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGAT > 2:174727/1‑78 CCTCCTGGGCTCACGCCTGCTCGGTGATGACCTGGCGGATACAGGCCATCAGCGCGACTGCCGCCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2864187‑2864030‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctggcaCTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGATGGCCTGTATCCGCCAGGTCATCACCGAGCAGGCGTGAGCCCAGGAGGGTGCCTTAAAGTAGGCTCAGCGGGT > NC_002947/2864064‑2864212 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |