New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3968919 =	27 (0.310)	10 (0.120)	8/240	NT	14.9%	coding (1003/1179 nt)	PP_3498	transposase
	?	NC_002947	3969010 =	88 (1.030)					coding (1094/1179 nt)	PP_3498	transposase

TTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCATATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTGATCGGAATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3969070‑3968919 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAACATTGACC  >  NC_002947/3969010‑3969155                                                                                                                                                                                                                                                                                                             TTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCATATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTGATCGGAA                                                                                                                                                      >  1:136303/1‑150   TTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCATATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAGGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTGATCGGAATC                                                                                                                                                    >  1:2046650/1‑150                                                                      TTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTGATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGA                                                                                 >  1:1855486/1‑150                                                                           CAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTGATCGGAATCTGCGGATTGTATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGG                                                                            >  2:134743/1‑150                                                                              CCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTT                                                                                                                              <  1:291394/98‑1                                                                              CCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTT                                                                                                                              >  2:291394/1‑98                                                                                        GCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCT                                                                >  1:2147869/1‑150                                                                                         CCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTGATCGGAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAAC                                                                                                       <  1:1223781/109‑1                                                                                         CCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTGATCGGAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAAC                                                                                                       >  2:1223781/1‑109                                                                                           TCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTGATCGGAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACC                                                            >  2:1981719/1‑150                                                                                                      AAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTGATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAT                                                 <  2:1855486/150‑1                                                                                                                          AGAGGCGGCGATCA‑TCTGGCTGATCGGAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGC                             <  1:1981719/150‑1                                                                                                                                                      AATCTGCGGATTGTATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAACATTGACC  <  1:134743/150‑1                                                                                                                                                                                                                                                                                                             TTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCATATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTGATCGGAATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3969070‑3968919 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAACATTGACC  >  NC_002947/3969010‑3969155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.