BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3968919 =	27 (0.310)	10 (0.120)	8/240	NT	14.9%	coding (1003/1179 nt)	PP_3498	transposase
*	?	NC_002947	3969010 =	88 (1.030)	10 (0.120)	8/240	NT	14.9%	coding (1094/1179 nt)	PP_3498	transposase

Only 100 of 107 total aligned reads displayed.

GCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAACATTGACCCTAG  >  NC_002947/3968872‑3969159

gCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTatat                                                                                                                                            <  2:1506163/150‑1 (MQ=31)

  cTGGTGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTTTTGCGCTGGCTATCCCGCCTTGGGGGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATgg                                                                                                                                          <  1:227348/150‑1 (MQ=12)

   tgatgaTCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGCGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATggg                                                                                                                                         >  1:271554/1‑150 (MQ=17)

    gatgatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGc                                                                                                                                        >  2:136303/1‑150 (MQ=32)

    gatgatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGc                                                                                                                                        <  1:1903078/150‑1 (MQ=32)

     atgatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGcc                                                                                                                                       >  2:1020725/1‑150 (MQ=32)

        atCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTg                                                                                                                                    <  1:132800/150‑1 (MQ=32)

            aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGccc                                                                                                                                      <  2:93862/144‑1 (MQ=32)

            aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGccc                                                                                                                                      >  1:93862/1‑144 (MQ=32)

              ggCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACag                                                                                                                              >  2:1154730/1‑150 (MQ=32)

                 gcgcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGc                                                                                                                           <  1:3130/150‑1 (MQ=32)

                   gcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATg                                                                                                                                           <  1:126921/132‑1 (MQ=32)

                   gcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATg                                                                                                                                           >  2:126921/1‑132 (MQ=32)

                   gcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGa                                                                                                                         >  1:2137696/1‑150 (MQ=32)

                   gcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGa                                                                                                                         >  2:1160828/1‑150 (MQ=32)

                   gcATTCCGTCGTTAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGa                                                                                                                         >  2:1160839/1‑150 (MQ=17)

                     aTTCCGTCTTGACCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATc                                                                                                                       <  1:204293/150‑1 (MQ=17)

                        ccGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAgg                                                                                                                    <  1:1261468/150‑1 (MQ=32)

                             ttGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTCTCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTa                                                                                                                                 <  1:756175/132‑1 (MQ=18)

                             ttGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTa                                                                                                                                 >  2:756175/1‑132 (MQ=33)

                             ttGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTAc                                                                                                               >  1:326216/1‑150 (MQ=32)

                                  ccAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACaga                                                                                                                             >  1:1143547/1‑131 (MQ=33)

                                  ccAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACaga                                                                                                                             <  2:1143547/131‑1 (MQ=33)

                                      cTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCaa                                                                                                       <  2:893681/149‑1 (MQ=32)

                                      cTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCaa                                                                                                       >  1:893681/1‑149 (MQ=32)

                                        aaGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTAc                                                                                                               >  1:670455/1‑139 (MQ=33)

                                        aaGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTAc                                                                                                               <  2:670455/139‑1 (MQ=33)

                                           gCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACaga                                                                                                                             >  1:993816/1‑122 (MQ=33)

                                           gCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc                                                                                                           >  1:752507/1‑140 (MQ=33)

                                           gCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc                                                                                                           >  1:752497/1‑140 (MQ=33)

                                           gCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc                                                                                                           <  2:752497/140‑1 (MQ=33)

                                           gCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc                                                                                                           <  2:752507/140‑1 (MQ=33)

                                              tGATTCCGATCAGCCGGATGAGCGCGGCCTCTTGCGCTGGCTACCCCGCCTTGGGCGAAAGGGGGGGGCGATAAGGCTGGCTAA‑T‑CGAAATCTGGGGATTATAGGGGCCCTGTTACAGAGCGATCAGGTTTCCCAACGCAACCcgaacgg                                                                                              <  2:1980424/150‑2 (MQ=11)

                                              tGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaacga                                                                                              >  1:191486/1‑150 (MQ=32)

                                              tGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCA‑‑CAGGTAAAGTGCGTAATCTGCGGGGTATATGGGCCCCGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaacga                                                                                              >  1:1571630/1‑150 (MQ=11)

                                               GATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCCTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaacgaa                                                                                             >  1:2046650‑M1/1‑150 (MQ=255)

                                                 TTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGaaaa                                                                                           >  1:136303‑M1/1‑150 (MQ=255)

                                                      aTCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCgg                                                                                      >  1:1977686/1‑150 (MQ=32)

                                                       tCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaac                                                                                                >  1:242559/1‑139 (MQ=33)

                                                       tCAGCCAGATGATCGCCGCCTCTTGAGATCGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAGCGCAAACCGGACGAAAACCCGGa                                                                                     >  1:652218/1‑150 (MQ=11)

                                                         ttagccagcctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcatctggctgatcgaaatcTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGa                                                                                     >  1:1855486‑M2/84‑150 (MQ=255)

                                                             aGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCaa                                                                                                            >  2:536011/1‑121 (MQ=33)

                                                             aGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcggc                                                                               <  1:1154730/150‑1 (MQ=32)

                                                              cagcctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcatctggctgatcggaatcTGCGGATTGTATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcgg                                                                                >  2:134743‑M2/79‑150 (MQ=255)

                                                                tgatCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTAt                                                                            <  2:191486/150‑1 (MQ=32)

                                                                cctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcaggctggctaatcgaaatcTGCGGATTATATGGGCCCTGtt                                                                                                                                  <  1:291394‑M2/22‑1 (MQ=255)

                                                                cctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcaggctggctaatcgaaatcTGCGGATTATATGGGCCCTGtt                                                                                                                                  >  2:291394‑M2/77‑98 (MQ=255)

                                                                   tCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTg                                                                                                                                    <  2:1131273/91‑1 (MQ=34)

                                                                   tCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTg                                                                                                                                    >  1:1131273/1‑91 (MQ=34)

                                                                   tCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAg                                                                         >  2:1254339/1‑150 (MQ=32)

                                                                     gccgccTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAg                                                                                                                     <  2:926321/104‑1 (MQ=33)

                                                                     gccgccTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAg                                                                                                                     >  1:926321/1‑104 (MQ=33)

                                                                      ccgccTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCct                                                                      <  2:2080349/150‑1 (MQ=32)

                                                                      ccgccTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCct                                                                      >  2:1619558/1‑150 (MQ=32)

                                                                       cgccTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCctc                                                                     >  1:1448241/1‑150 (MQ=32)

                                                                        gccTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACaga                                                                                                                             <  1:887226/93‑1 (MQ=34)

                                                                        gccTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACaga                                                                                                                             >  2:887226/1‑93 (MQ=34)

                                                                          gcctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcaggctggctaatcgaaatcTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCctct                                                                    >  1:2147869‑M2/67‑150 (MQ=255)

                                                                            cctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcatctggctgatcggaatcTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc                                                                                                           <  1:1223781‑M2/45‑1 (MQ=255)

                                                                            cctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcatctggctgatcggaatcTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc                                                                                                           >  2:1223781‑M2/65‑109 (MQ=255)

                                                                              tccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcatctggctgatcggaatcTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGAcc                                                                >  2:1981719‑M2/63‑150 (MQ=255)

                                                                                  cTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCgt                                                          <  1:82480/150‑2 (MQ=17)

                                                                                  cTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCgg                                                          <  1:2134533/150‑1 (MQ=32)

                                                                                  cTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCgg                                                          >  2:2164888/1‑150 (MQ=32)

                                                                                       tATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAC‑T‑CGCAGGCTGGGGACGATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAt                                                     <  2:652218/150‑1 (MQ=11)

                                                                                       tATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAt                                                     >  1:161303/1‑150 (MQ=32)

                                                                                         aaggcgggatagccagcgcaagaggcggcgatcatctggctgatcgaaatcTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAt                                                     <  2:1855486‑M2/99‑1 (MQ=255)

                                                                                            cGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCAc                                                <  2:1472205/150‑1 (MQ=32)

                                                                                             gCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCAcc                                               >  1:2187952/1‑150 (MQ=32)

                                                                                             gCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCAcc                                               <  2:1686018/150‑1 (MQ=32)

                                                                                               cTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAt                                                     <  1:1124634/142‑1 (MQ=32)

                                                                                                ttGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCggg                                            <  1:1160828/150‑1 (MQ=32)

                                                                                                ttGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCggg                                            <  1:1160839/150‑1 (MQ=32)

                                                                                                 tGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCgggg                                           <  1:2049296/150‑1 (MQ=32)

                                                                                                 tGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCgggg                                           <  2:2119447/150‑1 (MQ=32)

                                                                                                    gcgcAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGgcgc                                        >  1:1817881/1‑150 (MQ=32)

                                                                                                        aaGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAgg                                    >  1:214256/1‑150 (MQ=32)

                                                                                                           gaggCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGgcgc                                 <  2:1977686/150‑1 (MQ=32)

                                                                                                             agaggcggcgatcatctggctgatcggaatcTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGgcgc                                 <  1:1981719‑M2/119‑1 (MQ=255)

                                                                                                              gcggcgATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa                                                                  <  1:1420086/114‑1 (MQ=33)

                                                                                                              gcggcgATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa                                                                  >  2:1420086/1‑114 (MQ=33)

                                                                                                              gcggcgATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCgg                                                          <  2:1434215/122‑1 (MQ=33)

                                                                                                              gcggcgATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCgg                                                          >  1:1434215/1‑122 (MQ=33)

                                                                                                                    aTCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAAcccc                        <  1:1263945/150‑1 (MQ=32)

                                                                                                                       aGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGc                     <  2:2147869/150‑1 (MQ=32)

                                                                                                                         gctggctAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa                                                                  >  1:793960/1‑103 (MQ=33)

                                                                                                                         gctggctAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa                                                                  <  2:793960/103‑1 (MQ=33)

                                                                                                                         gctggctAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTa                   <  1:2164888/150‑1 (MQ=32)

                                                                                                                             gctAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc                                                                                                           <  2:73969/58‑1 (MQ=35)

                                                                                                                             gctAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc                                                                                                           >  1:73969/1‑58 (MQ=38)

                                                                                                                               tAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAAc             >  1:1358252/1‑150 (MQ=32)

                                                                                                                                aa‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAAc                                                                                                     <  2:2297936/61‑1 (MQ=37)

                                                                                                                                aa‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAAc                                                                                                     >  1:2297936/1‑61 (MQ=37)

                                                                                                                                   t‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAACAtt          <  2:1013720/150‑1 (MQ=32)

                                                                                                                                     cGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAACATTg         <  2:326216/150‑1 (MQ=32)

                                                                                                                                     cGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAACATTg         >  1:2214918/1‑150 (MQ=32)

                                                                                                                                       aaaTCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTCCCAAACGCACACTGAACGAAATCCCGTAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAACATTGAc       <  1:1210491/150‑1 (MQ=11)

                                                                                                                                        aatcTGCGGATTGTATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAACATTGAcc      <  1:134743‑M2/146‑1 (MQ=255)

                                                                                                                                            tGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAACATTGACCCTAg  <  2:2214918/150‑1 (MQ=32)

                                                                                                                                            tGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAACATTGACCCTAg  <  2:2137696/150‑1 (MQ=32)

GCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAA‑T‑CGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAACATTGACCCTAG  >  NC_002947/3968872‑3969159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.