New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4074203 =	NA (NA)	8 (0.090)	5/238	NT	58.2%	coding (1256/1329 nt)	PP_3586	transposase
	?	NC_002947	5545215 =	6 (0.070)					intergenic (‑307/+570)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB

ATTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑aagcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4074351‑4074203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  >  NC_002947/5545215‑5545368                                                                                                                                                                                                                                                                                                                      ATTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑A                                                                                                                                                           >  2:1871013/1‑150  TTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑Ac                                                                                                                                                          >  2:532367/1‑149  TTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          <  2:2122885/150‑1    GGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGC                                                                                                                                                        <  1:1351937/150‑1     GCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC                                                                                                                                                       >  2:931376/1‑150     GCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC                                                                                                                                                       >  1:2258033/1‑150     GCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC                                                                                                                                                       >  1:2135850/1‑150     GCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC                                                                                                                                                       <  1:2188158/150‑1              ACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC                                                                                                                                                       >  2:2024342/1‑141              ACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC                                                                                                                                                       <  1:2024342/141‑1                                GAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTC                                                                                                                                 >  2:483392/1‑150                                 AATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC                                                                                                                                                       >  2:1751421/1‑122                                 AATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC                                                                                                                                                       <  1:1751421/122‑1                                       TACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTC                                                                                                                          <  1:483392/150‑1                                                   CATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          <  2:1269788/101‑1                                                   CATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          >  1:1269788/1‑101                                                                    ATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGC                                                                                                                                                        <  1:181084/86‑1                                                                    ATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGC                                                                                                                                                        >  2:181084/1‑86                                                                         TTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          <  2:984046/79‑1                                                                         TTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          >  1:984046/1‑79                                                                              ACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCT                                                                                                                                <  2:608914/105‑1                                                                              ACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCT                                                                                                                                >  1:608914/1‑105                                                                                          CAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTCT                                                                                                                                >  1:1456785/1‑88                                                                                          CAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTCT                                                                                                                                <  2:1456785/88‑1                                                                                          CAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAG‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTC                                                                                                                                 <  2:103385/87‑1                                                                                          CAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAG‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTC                                                                                                                                 >  1:103385/1‑87                                                                                                                                                          ccAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTC       >  2:89883/3‑150                                                                                                                                                           AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCA      <  1:2125127/150‑1                                                                                                                                                           AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTAGAGTCA      >  1:1216639/1‑150                                                                                                                                                           AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGC                        >  2:2202894/1‑132                                                                                                                                                           AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGC                        <  1:2202894/132‑1                                                                                                                                                            AGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCT                       >  2:418834/1‑132                                                                                                                                                            AGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCT                       <  1:418834/132‑1                                                                                                                                                             GCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGT    <  1:1379606/150‑1                                                                                                                                                             GCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGT    >  2:549762/1‑150                                                                                                                                                             GCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGT    >  2:621444/1‑150                                                                                                                                                             GCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGT                    >  1:569267/1‑134                                                                                                                                                             GCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGT                    <  2:569267/134‑1                                                                                                                                                             GCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTG                                                                                  >  2:1341557/1‑72                                                                                                                                                             GCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTG                                                                                  <  1:1341557/72‑1                                                                                                                                                              CCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTC   >  1:829780/1‑150                                                                                                                                                              CCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTC   >  2:926389/1‑150                                                                                                                                                              CCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTC   <  2:1280110/150‑1                                                                                                                                                              CCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACA                                                                           <  1:840987/78‑1                                                                                                                                                              CCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACA                                                                           >  2:840987/1‑78                                                                                                                                                               CCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  >  2:1412454/1‑150                                                                                                                                                               CCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  >  1:1360644/1‑150                                                                                                                                                               CCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGC                        >  2:1589124/1‑128                                                                                                                                                               CCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGC                        <  1:1589124/128‑1                                                                                                                                                                                                                                                                                                                      ATTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑aagcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4074351‑4074203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  >  NC_002947/5545215‑5545368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.