| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4074203 = | NA (NA) | 8 (0.090) | 5/238 | NT | 58.2% | coding (1256/1329 nt) | PP_3586 | transposase |
| ? | NC_002947 | 5545215 = | 6 (0.070) | intergenic (‑307/+570) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
GTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCA > NC_002947/5545066‑5545364 | attggcgcatcgcaccgagccagactgactcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccaga > 2:1871013‑M2/150‑150 (MQ=255) ttggcgcatcgcaccgagccagactgactcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagac > 2:532367‑M2/149‑149 (MQ=255) ttggcgcatcgcaccgagccagactgactcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaa < 2:2122885‑M2/2‑1 (MQ=255) ggcgcatcgcaccgagccagactgactcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGc < 1:1351937‑M2/4‑1 (MQ=255) aagatTTGATCATCTTGAAACATACTTACAGTCAGCGTGCCCTTTCTCTGCTGAATCCCTTTTTATCAAACAAAATCCAACCCATTGTTTTCTATGCACTCAAGCGGTCATGACTGGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGc < 2:844344/147‑1 (MQ=9) gcgcatcgcaccgagccagactgactcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGcc > 2:931376‑M2/146‑150 (MQ=255) gcgcatcgcaccgagccagactgactcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGcc > 1:2258033‑M2/146‑150 (MQ=255) gcgcatcgcaccgagccagactgactcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGcc < 1:2188158‑M2/5‑1 (MQ=255) gcgcatcgcaccgagccagactgactcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGcc > 1:2135850‑M2/146‑150 (MQ=255) atTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTAAGCCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCg > 1:1009739/1‑150 (MQ=255) ttGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGa < 1:1706539/150‑1 (MQ=255) accgagccagactgactcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGcc > 2:2024342‑M2/137‑141 (MQ=255) accgagccagactgactcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGcc < 1:2024342‑M2/5‑1 (MQ=255) aaaCATATTTACAGGCTGCGAGCCCTTTCGCGGTGGAACCCGCTTTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGAAACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCtt > 2:1673267/1‑150 (MQ=14) cATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTtgcg < 1:1835605/150‑3 (MQ=255) gaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaagcaAAGCCCGGACCTGCCGGTCTtggcttc > 2:483392‑M2/124‑150 (MQ=255) aatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGcc < 1:1751421‑M2/5‑1 (MQ=255) aatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGcc > 2:1751421‑M2/118‑122 (MQ=255) taccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaagcaAAGCCCGGACCTGCCGGTCTtggcttctggcttc < 1:483392‑M2/34‑1 (MQ=255) ccTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCa > 2:90902/1‑150 (MQ=32) tttCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAg > 2:71698/1‑150 (MQ=11) catcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaa < 2:1269788‑M2/2‑1 (MQ=255) catcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaa > 1:1269788‑M2/100‑101 (MQ=255) atcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGc < 1:181084‑M2/4‑1 (MQ=255) atcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGc > 2:181084‑M2/83‑86 (MQ=255) ttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaa < 2:984046‑M2/2‑1 (MQ=255) ttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaa > 1:984046‑M2/78‑79 (MQ=255) acgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaagcaAAGCCCGGACCTGCCGGTCTtggcttct > 1:608914‑M2/78‑105 (MQ=255) acgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaagcaAAGCCCGGACCTGCCGGTCTtggcttct < 2:608914‑M2/28‑1 (MQ=255) caacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGCCCGGACCTGCCGGTCTtggcttct < 2:1456785‑M2/28‑1 (MQ=255) caacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGCCCGGACCTGCCGGTCTtggcttct > 1:1456785‑M2/61‑88 (MQ=255) caacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaaaccagAAGCCCGGACCTGCCGGTCTtggcttc < 2:103385‑M2/27‑1 (MQ=255) caacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaaaccagAAGCCCGGACCTGCCGGTCTtggcttc > 1:103385‑M2/61‑87 (MQ=255) AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGc > 2:2202894‑M2/1‑132 (MQ=255) AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGc < 1:2202894‑M2/132‑1 (MQ=255) AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGagtca < 1:2125127‑M2/150‑1 (MQ=255) AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTAGagtca > 1:1216639‑M2/1‑150 (MQ=255) | GTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCA > NC_002947/5545066‑5545364 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |